enormandeau / stacks_workflow
RADseq workflow using STACKS
☆57Updated last month
Alternatives and similar repositories for stacks_workflow:
Users that are interested in stacks_workflow are comparing it to the libraries listed below
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆56Updated 3 months ago
- Repository for speciation genomics website☆24Updated 6 months ago
- Topology weighting by iterative sampling of sub-trees☆73Updated 3 weeks ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆63Updated 9 months ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- ☆26Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆27Updated 3 weeks ago
- Tutorial about R package PopGenome☆41Updated 5 years ago
- Workflow to detect and phase hybrids in target capture data☆18Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 4 months ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- MSMC2 Scripts☆23Updated 10 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Hybridization detection using phylogenetic invariants☆44Updated 3 months ago
- Scripts for analysis used during the course☆86Updated 9 months ago
- Presentations from the course☆36Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆30Updated 10 months ago
- ☆80Updated 3 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- ☆38Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆42Updated this week
- A collection of usefull tools for RAD or GBS data analysis☆32Updated 11 months ago
- Software for ancestry estimation in unrelated individuals☆16Updated this week
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆24Updated this week
- GONE: Scripts, programs and an example data set☆43Updated last year
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆46Updated this week
- Recovering genes from targeted sequence capture data☆115Updated 3 weeks ago
- R package for analysis of hybrids and hybrid zones☆19Updated last year