enormandeau / stacks_workflowLinks
RADseq workflow using STACKS
☆61Updated 3 weeks ago
Alternatives and similar repositories for stacks_workflow
Users that are interested in stacks_workflow are comparing it to the libraries listed below
Sorting:
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- Recovering genes from targeted sequence capture data☆130Updated 5 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- Repository for speciation genomics website☆27Updated 3 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Hybridization detection using phylogenetic invariants☆52Updated last year
- Presentations from the course☆38Updated 2 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated last month
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated 2 years ago
- MSMC2 Scripts☆28Updated 2 months ago
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 7 months ago
- Synteny Imager☆65Updated this week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Updated last week
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 3 years ago
- ☆34Updated 3 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆24Updated 2 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆64Updated 3 weeks ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Scripts for analysis used during the course☆93Updated last year