enormandeau / stacks_workflowLinks
RADseq workflow using STACKS
☆58Updated last month
Alternatives and similar repositories for stacks_workflow
Users that are interested in stacks_workflow are comparing it to the libraries listed below
Sorting:
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated 2 months ago
- Topology weighting by iterative sampling of sub-trees☆79Updated 6 months ago
- Repository for speciation genomics website☆26Updated 11 months ago
- Tutorial about R package PopGenome☆42Updated 6 years ago
- Presentations from the course☆37Updated last year
- Hybridization detection using phylogenetic invariants☆47Updated 8 months ago
- ☆31Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆53Updated 2 years ago
- GONE: Scripts, programs and an example data set☆48Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- ☆26Updated 2 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- MSMC2 Scripts☆26Updated last year
- ☆40Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆48Updated 2 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆60Updated 8 months ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Scripts for analysis used during the course☆93Updated last year
- ☆19Updated 7 years ago
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Recovering genes from targeted sequence capture data☆126Updated 2 weeks ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Tutorials on evolutionary genomics☆45Updated 3 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 10 months ago
- A pipeline that accepts a VCF file to run through Admixture☆61Updated 6 months ago