enormandeau / stacks_workflowLinks
RADseq workflow using STACKS
☆57Updated this week
Alternatives and similar repositories for stacks_workflow
Users that are interested in stacks_workflow are comparing it to the libraries listed below
Sorting:
- Repository for speciation genomics website☆25Updated 10 months ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 7 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Workflow to detect and phase hybrids in target capture data☆19Updated 2 years ago
- ☆26Updated last year
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Topology weighting by iterative sampling of sub-trees☆79Updated 5 months ago
- ☆13Updated 7 years ago
- Hybridization detection using phylogenetic invariants☆47Updated 7 months ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- Assembly of Phylogenomic Datasets from High-Throughput Sequencing data☆26Updated this week
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- MSMC2 Scripts☆24Updated last year
- Presentations from the course☆37Updated last year
- a bash pipeline for RAD sequencing☆55Updated 4 months ago
- Quantifying Introgression via Branch Lengths☆52Updated 2 years ago
- Recovering genes from targeted sequence capture data☆123Updated 4 months ago
- ☆31Updated 3 years ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆16Updated 4 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆52Updated 4 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- A collection of usefull tools for RAD or GBS data analysis☆33Updated 2 months ago
- ☆18Updated 4 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- This repository contains the code and manual for the R package delimitR.☆17Updated 3 years ago
- Population assignment analysis using R☆17Updated 2 months ago
- ☆39Updated last year