RADseq workflow using STACKS
☆62Jul 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for stacks_workflow
Users that are interested in stacks_workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- eDNA metabarcoding pipeline☆48Jul 22, 2026Updated 3 weeks ago
- Population assignment analysis using R☆16Jul 4, 2025Updated last year
- ☆35Jun 15, 2023Updated 3 years ago
- Transcripts annotation and GO enrichment Fisher tests☆27Apr 28, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 6 months ago
- Pipeline for transcriptome de novo assembly☆12Mar 1, 2018Updated 8 years ago
- ☆18Jun 30, 2023Updated 3 years ago
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆17Feb 23, 2026Updated 5 months ago
- RADseq Data Exploration, Manipulation and Visualization using R☆61Sep 4, 2025Updated 11 months ago
- A set of functions to visualise genotypes based on a VCF☆90Jan 28, 2022Updated 4 years ago
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Jan 5, 2026Updated 7 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- ☆16Jun 14, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- Collection of various scripts☆80Jun 1, 2026Updated 2 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- a bash pipeline for RAD sequencing☆55Jan 27, 2025Updated last year
- Crash course for NCBI blast tools☆48Jun 17, 2019Updated 7 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- polysat 1.7: tools for polyploid microsatellite analysis☆12Dec 20, 2024Updated last year
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆168Jul 20, 2026Updated 3 weeks ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 4 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Jul 5, 2026Updated last month
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆72Oct 24, 2025Updated 9 months ago
- Software for hybridization capture bait design☆12Jun 12, 2026Updated 2 months ago
- ☆16Jan 6, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆17Feb 19, 2022Updated 4 years ago
- ☆12Dec 14, 2016Updated 9 years ago
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated 2 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- Program for analysing NGS data.☆264Mar 6, 2025Updated last year