zjnolen / PopGLenLinks
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
☆14Updated last month
Alternatives and similar repositories for PopGLen
Users that are interested in PopGLen are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated last month
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated last month
- issues for semina "Data Visulization"☆13Updated last month
- Killifish genomics scripts☆12Updated 4 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Updated 3 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 5 years ago
- Scripts to convert between file formats for various analyses☆16Updated 2 months ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆27Updated 3 weeks ago
- Some codes about evolutionary history of wheats☆8Updated last year
- ☆14Updated 3 years ago
- ☆25Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- Working on cotton resequencing☆11Updated 5 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated 11 months ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- ☆18Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- ☆24Updated 8 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆24Updated last year
- Scripts to handle NGS data and other biological data☆21Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- ☆15Updated last year
- ☆16Updated 9 months ago