nt246 / lcwgs-guide-tutorialLinks
☆91Updated 4 years ago
Alternatives and similar repositories for lcwgs-guide-tutorial
Users that are interested in lcwgs-guide-tutorial are comparing it to the libraries listed below
Sorting:
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- A library for running k-mers based GWAS☆116Updated last year
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆85Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- Scripts for analysis used during the course☆92Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆91Updated last year
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 9 months ago
- NLR-Annotator upload☆73Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 8 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆108Updated 3 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆100Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 5 months ago
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆82Updated 2 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆167Updated last year
- Haplotype based scans for selection☆134Updated last week
- Collection of tools for the analysis of CpG data☆96Updated 3 months ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆125Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆98Updated 2 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Methods for examining PCA locally along the genome.☆85Updated last year
- Make colorful identity heatmaps of genomic sequence☆123Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆144Updated last week
- Application of pan-genome for population☆113Updated this week
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago