☆107Oct 14, 2021Updated 4 years ago
Alternatives and similar repositories for lcwgs-guide-tutorial
Users that are interested in lcwgs-guide-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19May 27, 2022Updated 4 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆72Oct 24, 2025Updated 9 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆32Jan 21, 2026Updated 6 months ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆29Jul 8, 2026Updated 2 weeks ago
- ☆33Jun 15, 2023Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- Population genetics analyses from NGS data☆27Mar 8, 2021Updated 5 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated last year
- ☆49Jun 26, 2026Updated 3 weeks ago
- Copy number variation detection using NGS data.☆21Oct 26, 2023Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆70Apr 9, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Program for analysing NGS data.☆262Mar 6, 2025Updated last year
- GONE: Scripts, programs and an example data set☆56May 12, 2026Updated 2 months ago
- WinPCA. A package for windowed principal component analysis.☆54Jun 9, 2026Updated last month
- Methods for examining PCA locally along the genome.☆89Aug 13, 2024Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆117Jun 24, 2025Updated last year
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Vignettes for Population Genetics in R☆26Aug 11, 2020Updated 5 years ago
- Documentation archive for GATK tools and workflows☆93Jan 6, 2020Updated 6 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆177Apr 17, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Mar 7, 2021Updated 5 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆339Jul 7, 2023Updated 3 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆38May 9, 2024Updated 2 years ago
- ☆32Mar 3, 2026Updated 4 months ago
- Tutorial for visualising admixture on a map☆25Jan 4, 2021Updated 5 years ago
- Tutorials on evolutionary genomics☆47Mar 11, 2022Updated 4 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 3 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- CCB Skills Seminar (Fall 2023) - snakemake☆19Oct 16, 2023Updated 2 years ago
- Tutorials on phylogenetic and phylogenomic inference☆401Apr 12, 2026Updated 3 months ago
- ☆15Mar 20, 2023Updated 3 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆16Aug 11, 2023Updated 2 years ago
- This repository contains the code and manual for the R package delimitR.☆17Apr 19, 2022Updated 4 years ago