Alternatives and similar repositories for lcwgs-guide-tutorial

Users that are interested in lcwgs-guide-tutorial are comparing it to the libraries listed below

• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆84Updated 4 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆119Updated last year
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆92Updated last year
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆136Updated 2 weeks ago
• HuffordLab / NAM-genomes
  Detailed bioinformatics scripts and methods used in the NAM genome paper.
  ☆86Updated 10 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆73Updated 2 years ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆100Updated 3 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆131Updated last month
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 2 months ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated 10 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆118Updated 2 years ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆167Updated last year
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆92Updated last year
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated last week
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆148Updated 3 weeks ago
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆85Updated 2 months ago
• bmansfeld / QTLseqr
  QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis
  ☆82Updated 5 years ago
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆99Updated 2 months ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 11 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆100Updated this week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆97Updated 4 months ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆102Updated last month
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆104Updated 5 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆110Updated 3 months ago