nt246 / lcwgs-guide-tutorial
☆85Updated 3 years ago
Alternatives and similar repositories for lcwgs-guide-tutorial
Users that are interested in lcwgs-guide-tutorial are comparing it to the libraries listed below
Sorting:
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Scripts for analysis used during the course☆90Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- Reference-free profiling of polyploid genomes☆115Updated 10 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆96Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆171Updated 4 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆59Updated 6 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆102Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆95Updated this week
- A library for running k-mers based GWAS☆109Updated 6 months ago
- Haplotype based scans for selection☆127Updated 3 weeks ago
- SMC++ infers population history from whole-genome sequence data.☆165Updated last year
- NLR-Annotator upload☆65Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆65Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated this week
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆34Updated 4 years ago
- Useful bioinformatic scripts☆56Updated 5 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆52Updated last month
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Methods for examining PCA locally along the genome.☆79Updated 9 months ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆89Updated 5 months ago
- Same species annotation lift over pipeline.☆97Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- ☆78Updated 10 months ago
- a bash pipeline for RAD sequencing☆55Updated 3 months ago
- A pipeline that accepts a VCF file to run through Admixture☆60Updated 4 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago