Alternatives and similar repositories for mapcomp

Users that are interested in mapcomp are comparing it to the libraries listed below

• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• GenisGE / evalAdmix
  ☆15Updated last year
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆19Updated 5 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• ANGSD / NgsRelate
  ☆44Updated 8 months ago
• whitlock / OutFLANK
  A procedure to find Fst outliers based on an inferred distribution of neutral Fst
  ☆19Updated 6 years ago
• bwringe / hybriddetective
  ☆15Updated 2 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆29Updated 6 years ago
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 6 months ago
• tplinderoth / ngsParalog
  Copy number variation detection using NGS data.
  ☆18Updated 2 years ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆17Updated 3 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• novikovalab / piawka
  The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
  ☆31Updated 4 months ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 6 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆16Updated last year
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆56Updated 5 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆16Updated 5 months ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆18Updated 8 years ago
• pdimens / harpy
  Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
  ☆18Updated last week
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆50Updated 5 months ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago