enormandeau / mapcomp

Related projects ⓘ

Alternatives and complementary repositories for mapcomp

• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 5 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆15Updated 4 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆23Updated 5 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆15Updated 4 months ago
• GenisGE / evalAdmix
  ☆12Updated 6 months ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆12Updated 6 months ago
• hemstrow / snpR
  ☆28Updated this week
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 8 years ago
• GonzalezLab / T-lex3
  ☆14Updated 4 years ago
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆14Updated 4 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated 2 months ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated this week
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆13Updated 4 years ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆13Updated 2 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆45Updated last year
• ANGSD / NgsRelate
  ☆42Updated 10 months ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆35Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆27Updated last year
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆17Updated 5 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆49Updated 6 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆26Updated 3 years ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 2 years ago