Alternatives and similar repositories for mapcomp

Users that are interested in mapcomp are comparing it to the libraries listed below

• GonzalezLab / T-lex3
  ☆15Updated 5 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆19Updated 5 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• GenisGE / evalAdmix
  ☆15Updated last year
• whitlock / OutFLANK
  A procedure to find Fst outliers based on an inferred distribution of neutral Fst
  ☆19Updated 6 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• ANGSD / NgsRelate
  ☆46Updated 10 months ago
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆29Updated 6 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆30Updated 2 years ago
• bwringe / hybriddetective
  ☆15Updated 2 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆57Updated 6 months ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated 2 years ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 7 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆26Updated 4 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆51Updated 7 months ago
• ThomasTaus / poolSeq
  Analyze and simulate Pool-Seq time series data
  ☆17Updated 3 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆19Updated 2 weeks ago
• novikovalab / piawka
  The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
  ☆31Updated last month
• pdimens / harpy
  Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
  ☆18Updated last week
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 6 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆14Updated 6 months ago
• tplinderoth / ngsParalog
  Copy number variation detection using NGS data.
  ☆19Updated 2 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 7 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated 2 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆17Updated last year