YoukaiFromAccounting / skandiverLinks
skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequences using average nucleotide identity (ANI)
☆13Updated 2 months ago
Alternatives and similar repositories for skandiver
Users that are interested in skandiver are comparing it to the libraries listed below
Sorting:
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆27Updated 5 months ago
- UPHL's Reference Free Pipeline☆27Updated last week
- Microbial agile accurate SNP Typer☆29Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- Bacterial GWAS analysis☆44Updated 2 months ago
- A simple pipeline for bacterial assembly and quality control☆17Updated last week
- Prophage Activity Estimator☆28Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- ☆20Updated 2 years ago
- Population genomics from metagenomes☆12Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Analysing the genomic context of mobile genes☆11Updated 2 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- ☆26Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated 3 weeks ago
- ☆16Updated 5 months ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- strain-level analysis tools☆39Updated 11 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 7 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆20Updated 3 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year