meren / BLAST-filtering-pipelineView external linksLinks
A very simple BLAST filtering pipeline
☆19Mar 28, 2014Updated 11 years ago
Alternatives and similar repositories for BLAST-filtering-pipeline
Users that are interested in BLAST-filtering-pipeline are comparing it to the libraries listed below
Sorting:
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated this week
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆94Nov 24, 2025Updated 2 months ago
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Oct 22, 2025Updated 3 months ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Mar 6, 2024Updated last year
- Elucidate and visualise a compound's mechanism of action by combining structure-based target prediction with gene expression-based causal…☆13Feb 11, 2023Updated 3 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 2 months ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- ☆28Feb 27, 2024Updated last year
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 6 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Apr 1, 2018Updated 7 years ago
- A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/☆18Nov 15, 2012Updated 13 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- The R for Mass Spectrometry meta-package☆18Dec 24, 2023Updated 2 years ago
- Virus metagenomic pipeline for unknown host or in absence of a host genome☆18Sep 19, 2019Updated 6 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Feb 10, 2026Updated last week
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 9 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- A simple script to display stuff on a world map with R and ggplot☆17Sep 15, 2023Updated 2 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Jan 27, 2026Updated 2 weeks ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Bacterial GWAS analysis☆46Jan 18, 2026Updated 3 weeks ago