meren / BLAST-filtering-pipeline
A very simple BLAST filtering pipeline
☆18Updated 10 years ago
Alternatives and similar repositories for BLAST-filtering-pipeline:
Users that are interested in BLAST-filtering-pipeline are comparing it to the libraries listed below
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated 9 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆25Updated last month
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Updated 6 years ago
- MAG Circularization Method☆33Updated 2 years ago
- ☆22Updated last year
- Convert QIIME files into Oligotyping subsets.☆15Updated 10 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 10 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated 8 months ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 months ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 8 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 3 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 8 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 9 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated last month
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Updated 7 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆36Updated 4 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆20Updated 3 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year