A very simple BLAST filtering pipeline
☆20Mar 28, 2014Updated 12 years ago
Alternatives and similar repositories for BLAST-filtering-pipeline
Users that are interested in BLAST-filtering-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert QIIME files into Oligotyping subsets.☆15Dec 10, 2014Updated 11 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆95Nov 24, 2025Updated 8 months ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 5 months ago
- Simulate metagenomic short reads from one or more populations.☆26Jan 29, 2025Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Jun 17, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 5 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- ☆15Aug 28, 2014Updated 11 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- ☆28Feb 27, 2024Updated 2 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆12Jul 22, 2026Updated last week
- The R for Mass Spectrometry meta-package☆21May 11, 2026Updated 2 months ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa☆41Jul 17, 2026Updated last week
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- Virus metagenomic pipeline for unknown host or in absence of a host genome☆18Sep 19, 2019Updated 6 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆18Sep 27, 2016Updated 9 years ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Apr 15, 2026Updated 3 months ago
- ☆43Jul 31, 2017Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- ☆63Jul 16, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 4 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- Converts bam or cram files to fastq format and does quality control.☆32Updated this week
- Ying's tools for analysis, with particular focus on microbiome data☆40Jul 6, 2026Updated 3 weeks ago