meren / BLAST-filtering-pipeline
A very simple BLAST filtering pipeline
☆18Updated 11 years ago
Alternatives and similar repositories for BLAST-filtering-pipeline:
Users that are interested in BLAST-filtering-pipeline are comparing it to the libraries listed below
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆27Updated last week
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- shotgun pipeline☆12Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated 11 months ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 11 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 4 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 3 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 6 years ago
- Convert QIIME files into Oligotyping subsets.☆15Updated 10 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 5 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- MicrobeDirectory 2.0☆22Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 8 years ago
- ☆22Updated 2 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆29Updated 3 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago