merenlab / illumina-utilsLinks
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
☆93Updated last year
Alternatives and similar repositories for illumina-utils
Users that are interested in illumina-utils are comparing it to the libraries listed below
Sorting:
- ☆23Updated 7 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- SURPI☆86Updated 9 years ago
- Maximum likelihood demultiplexing☆48Updated 9 months ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- Micro 612 genomics workshop☆38Updated 4 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- ☆35Updated 2 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 6 months ago
- ☆79Updated 5 years ago
- A tutorial on methods of 16S analysis with QIIME 1☆70Updated 6 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 2 weeks ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago