merenlab / illumina-utilsLinks
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
☆92Updated last year
Alternatives and similar repositories for illumina-utils
Users that are interested in illumina-utils are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆23Updated 7 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated this week
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- A tutorial on methods of 16S analysis with QIIME 1☆70Updated 6 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆73Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 8 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- SURPI☆85Updated 9 years ago
- ☆35Updated 2 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆62Updated last year
- ☆73Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Micro 612 genomics workshop☆37Updated 4 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Scripts and libraries for Environmental Genomics☆38Updated 7 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago