ChandraPedamallu / PathSeqLinks
We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomic samples. This is a flexible, user-adaptable, pipeline that is easily assembled using a configuration file tailored towards particular sequencing experiment parameters such as type of sequencing library, sampl…
☆12Updated 8 years ago
Alternatives and similar repositories for PathSeq
Users that are interested in PathSeq are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆39Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Updated last week
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 7 months ago
- ☆15Updated 7 years ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- ☆23Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆18Updated 4 years ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 6 months ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- ☆21Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- Interactive eQTL visualizations☆13Updated 3 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Updated 4 months ago
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆24Updated 2 months ago
- ☆23Updated 2 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- alternative splicing analysis pipeline☆20Updated 4 years ago
- ☆30Updated 6 months ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Updated 3 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago