ChandraPedamallu / PathSeqLinks
We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomic samples. This is a flexible, user-adaptable, pipeline that is easily assembled using a configuration file tailored towards particular sequencing experiment parameters such as type of sequencing library, sampl…
☆11Updated 7 years ago
Alternatives and similar repositories for PathSeq
Users that are interested in PathSeq are comparing it to the libraries listed below
Sorting:
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- ☆21Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- a set of NGS pipelines☆24Updated last week
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Documentation for vcfR☆11Updated 5 months ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Updated 4 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆24Updated 6 months ago
- interactive plots for differential expression analysis☆34Updated 4 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆23Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago