philarevalo / PopCOGenTLinks
Microbial Populations as Clusters Of Gene Transfer
☆44Updated last year
Alternatives and similar repositories for PopCOGenT
Users that are interested in PopCOGenT are comparing it to the libraries listed below
Sorting:
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- ☆52Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆59Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- ☆25Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆44Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- ☆52Updated 4 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A toolbox for improving metagenome-assembled genomes.☆63Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 11 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆20Updated 9 months ago
- whole genome MLST analysis☆43Updated 2 weeks ago