Alternatives and similar repositories for Stegen_etal_ISME_2013:

Users that are interested in Stegen_etal_ISME_2013 are comparing it to the libraries listed below

• qichao1984 / NCyc
  ☆48Updated 4 years ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆31Updated 3 months ago
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 2 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆44Updated 2 years ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated 11 months ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆18Updated 4 years ago
• ChengGaoBerkeley / EPICON.Mycobiome
  ☆13Updated 3 years ago
• Linwei-Wu / Global-bacterial-diversity-in-WWTPs
  ☆23Updated 6 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆30Updated 9 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆65Updated last year
• ErnakovichLab / dada2_ernakovichlab
  ☆14Updated this week
• RiceMicrobiome / Edwards-et-al.-2014
  ☆14Updated 10 years ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆46Updated 3 years ago
• rogotoh / PMiFish
  ☆12Updated last year
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆15Updated 4 months ago
• danknights / sourcetracker
  ☆74Updated last year
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆74Updated 3 months ago
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆80Updated last month
• yuezhengfu / CNPS.cycle
  This is an R package for element cycle analysis using metagenomic data.
  ☆36Updated 5 months ago
• microbma / earthnetwork
  Microbial co-occurrence network inferred from Earth Microbiome Project
  ☆25Updated 5 years ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆44Updated 5 months ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆17Updated last year
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆53Updated last month
• allind / EukDetect
  ☆50Updated last year
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 2 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆14Updated 3 months ago
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆15Updated last year
• MadsAlbertsen / ampvis
  [deprecated] Please use ampvis2
  ☆8Updated 7 years ago