stegen / Stegen_etal_ISME_2013
Code for running analyses carried out in Stegen et al. 2013, ISME
☆29Updated 7 years ago
Alternatives and similar repositories for Stegen_etal_ISME_2013:
Users that are interested in Stegen_etal_ISME_2013 are comparing it to the libraries listed below
- ☆49Updated 4 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated last month
- dada2 formatted nifH database☆11Updated 10 months ago
- ☆13Updated 3 years ago
- ☆12Updated last year
- ☆14Updated this week
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆43Updated 4 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- ☆12Updated 5 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆64Updated last year
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 4 years ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆29Updated 8 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆80Updated this week
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- MetaCompare☆17Updated last year
- ☆50Updated 11 months ago
- ☆71Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆52Updated last week
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆47Updated 3 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆74Updated last month
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆14Updated last month
- ☆28Updated last year
- ☆14Updated 10 years ago
- ☆22Updated 6 years ago