stegen / Stegen_etal_ISME_2013
Code for running analyses carried out in Stegen et al. 2013, ISME
☆29Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for Stegen_etal_ISME_2013
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆28Updated this week
- ☆49Updated 3 years ago
- dada2 formatted nifH database☆11Updated 6 months ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- ☆11Updated 9 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆39Updated 3 years ago
- ☆13Updated 3 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆26Updated 4 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆45Updated 3 years ago
- ☆69Updated 11 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated 11 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆37Updated last week
- ☆13Updated this week
- R scripts for performing co-occurrence analyses☆34Updated 9 years ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- Various functions for analysis of microbial community data☆41Updated 2 years ago
- Integrated Network Analysis Pipeline☆14Updated last year
- ☆14Updated 10 years ago
- ☆27Updated 10 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆43Updated 8 months ago
- code repo for mobileOG-db☆32Updated 4 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆13Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆68Updated 9 months ago
- Tranform files to the microtable object in microeco package☆22Updated this week
- This is an R package for element cycle analysis using metagenomic data.☆36Updated this week
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆30Updated 2 years ago
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- MetaCompare☆17Updated 8 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆22Updated this week