Alternatives and similar repositories for xena-GDC-ETL

Users that are interested in xena-GDC-ETL are comparing it to the libraries listed below

• rnabioco / practical-data-analysis
  Short course using RStudio for biological data analysis
  ☆14Updated 2 years ago
• samabs / conliga
  Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)
  ☆9Updated 6 years ago
• molpopgen / BigDataFormats
  Tutorial on programming or "big data"/bioinformatics
  ☆32Updated 7 years ago
• sysbio-curie / NaviCell
  A web tool for exploring large maps of molecular interactions
  ☆10Updated this week
• aritra90 / TeraPCA
  TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…
  ☆15Updated 2 years ago
• HCBravoLab / metagenomeFeatures
  R package for annotating metagenomic datasets with taxonomic information
  ☆10Updated 5 years ago
• kbroman / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆10Updated this week
• lgautier / mashing-pumpkins
  Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.
  ☆21Updated 5 months ago
• urmi-21 / MetaOmGraph
  MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
  ☆33Updated 3 years ago
• NIH-HPC / snakemake-class
  Class materials for the NIH HPC snakemake class
  ☆16Updated 8 months ago
• jpritt / boiler
  Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments
  ☆13Updated 8 years ago
• sbg / sevenbridges-cwl
  Seven Bridges Python library for programatic generation of CWL workflows.
  ☆20Updated 2 years ago
• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 7 years ago
• mims-harvard / fusenet
  Network inference by fusing data from diverse distributions
  ☆14Updated 8 years ago
• jnovembre / BSD-QBio6
  UChicago BSD Quantitative Bootcamp 2020
  ☆11Updated 3 years ago
• yezhengSTAT / FreeHiC
  FreeHi-C pipeline for high fidelity Hi-C data simulation.
  ☆9Updated 4 years ago
• GGiecold-zz / ECLAIR
  Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …
  ☆14Updated 8 years ago
• jakelever / knowledgediscovery
  Analysis code for knowledge discovery project
  ☆12Updated 6 years ago
• slundberg / ChromNet.jl
  Integrates any BAM/BED file into the ChromNet group graphical model.
  ☆8Updated 6 years ago
• mnsmar / clipseqtools
  A suite for the analysis of CLIP-Seq datasets.
  ☆12Updated 3 years ago
• gmiaslab / mathiomica
  MathIOmica is a Mathematica package for omics data analyses
  ☆12Updated last year
• dewshr / NCBI-GenBank-file-parser
  This program can be used to parse the NCBI GenBank file to create a tabulated csv file.
  ☆10Updated 6 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 5 years ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 4 years ago
• biolab / orange3-single-cell
  🍊🔬 Orange add-on for gene expression of single cell data
  ☆17Updated last month
• seqan / needle
  A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
  ☆14Updated last week
• bioconda / bioconda.github.io
  Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.
  ☆38Updated this week
• cytomining / cytominer-database
  [DEPRECATED] A package for storing morphological profiling data.
  ☆10Updated 7 months ago
• ucscXena / ucsc-xena-client
  Functional genomics browser
  ☆59Updated this week
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago