ucscXena / xena-GDC-ETLLinks
Extract, transform and load GDC data onto UCSC Xena
☆13Updated 8 months ago
Alternatives and similar repositories for xena-GDC-ETL
Users that are interested in xena-GDC-ETL are comparing it to the libraries listed below
Sorting:
- Short course using RStudio for biological data analysis☆14Updated 2 years ago
- MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets☆33Updated 3 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Updated 2 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Smart search engine for all bioinformatics databases worldwide☆27Updated 7 years ago
- Using PubMed to find out how a gene contributes to addiction.☆21Updated 2 years ago
- Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn☆12Updated last year
- Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'☆12Updated 3 years ago
- Open-source software pipeline for cancer classification from high-throughput data using machine learning.☆18Updated 6 years ago
- [DEPRECATED] A package for storing morphological profiling data.☆10Updated 8 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Functional genomics browser☆59Updated 3 weeks ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- Search public databases for given genotypic information☆11Updated 7 years ago
- ☆11Updated 8 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Updated 5 years ago
- Notes and code for learning Random Forests☆13Updated 2 years ago
- ☆28Updated 6 years ago
- Integrates any BAM/BED file into the ChromNet group graphical model.☆8Updated 6 years ago
- A web tool for exploring large maps of molecular interactions☆10Updated this week
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆14Updated 6 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- A suite of machine learning tools for modeling viral adaptation to host immune responses.☆12Updated 2 years ago
- Python implementation of PANDA (Passing Attributes between Networks for Data Assimilation)☆39Updated 7 years ago
- A lightweight and flexible analysis pipeline☆11Updated last month
- ☆36Updated 2 months ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Updated last year
- MathIOmica is a Mathematica package for omics data analyses☆12Updated last year
- ☆29Updated 11 months ago