yuwwu / ezTreeLinks
A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes
☆14Updated 8 years ago
Alternatives and similar repositories for ezTree
Users that are interested in ezTree are comparing it to the libraries listed below
Sorting:
- ☆14Updated 8 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- StrainFinder☆29Updated 7 years ago
- Factorize metagenotypes to infer strains and their abundances☆12Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- Set of utilities on sequences and BAM files☆27Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- ☆18Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 7 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- ☆20Updated 9 years ago
- ☆42Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆39Updated 4 months ago
- Gene-flank analysis tool☆37Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Strain Resolution ON Graphs☆50Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago