yuwwu / ezTreeLinks
A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes
☆13Updated 8 years ago
Alternatives and similar repositories for ezTree
Users that are interested in ezTree are comparing it to the libraries listed below
Sorting:
- ☆14Updated 7 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- ☆18Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Gene-flank analysis tool☆28Updated 7 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆64Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- StrainFinder☆27Updated 7 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated 3 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- ☆53Updated 4 years ago
- Recombination-free trees☆58Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago