☆13Feb 19, 2024Updated 2 years ago
Alternatives and similar repositories for scPEFT
Users that are interested in scPEFT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- official repo for scPEFT☆51Jan 14, 2026Updated 2 months ago
- This study explored prompt-based learning to adapt the state-of-the-art image segmentation foundation model SAM for cryo-EM. Through tria…☆12Apr 27, 2025Updated 10 months ago
- ☆17Updated this week
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated 10 months ago
- Interactive applications of stlearn☆15May 1, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- ☆13Sep 30, 2024Updated last year
- ☆12Dec 4, 2023Updated 2 years ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated last month
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆48Sep 29, 2025Updated 5 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 5 months ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆24Feb 6, 2025Updated last year
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆36Dec 18, 2025Updated 3 months ago
- Bayesian optimization of discrete sequences☆21Mar 27, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Jan 20, 2026Updated 2 months ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆11Nov 2, 2023Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Dec 19, 2025Updated 3 months ago
- Python bindings for SingleR☆15Jan 6, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- ☆13Jun 4, 2023Updated 2 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- ☆16Dec 3, 2025Updated 3 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Apr 2, 2025Updated 11 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53May 19, 2025Updated 10 months ago
- ☆16Jan 6, 2025Updated last year
- ☆79Updated this week
- Supporting data files and code for the publication by Shilts et al.☆31Aug 28, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆74Dec 23, 2025Updated 3 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Conveniently process a dictionary of anndatas☆23Mar 13, 2026Updated last week
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆142Jan 29, 2026Updated last month
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year