Alternatives and similar repositories for scPEFT

Users that are interested in scPEFT are comparing it to the libraries listed below

• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• xiongxslab / Translatomer
  ☆24Updated 4 months ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆28Updated 2 years ago
• jzhoulab / puffin_manuscript
  ☆18Updated last year
• ejarmand / comparative_epigenomic_motor_cortex
  ☆10Updated last year
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆26Updated last year
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆19Updated last year
• Lotfollahi-lab / mintflow
  Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data
  ☆24Updated this week
• buenrostrolab / PRINT
  ☆20Updated last month
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆26Updated 8 months ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆21Updated last year
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆14Updated 2 years ago
• aristoteleo / spateo-tutorials
  tutorials for spateo package
  ☆20Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated 2 months ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 3 months ago
• GuoBioinfoLab / TCRdb
  A database of T-cell receptor sequences
  ☆11Updated 5 months ago
• JiaqiLiZju / Nvwa
  ☆36Updated 3 years ago
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• dylkot / pyWNN
  Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
  ☆19Updated 4 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆15Updated 7 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆17Updated last year
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆32Updated 11 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 10 months ago
• aertslab / scATAC-seq_benchmark
  ☆19Updated 2 years ago
• wooyongc / Benisse
  ☆18Updated last year
• guokai8 / rcellmarker
  Identify cell type based on cell markers for single cell squencing
  ☆11Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 11 months ago
• YeoLab / rbp-maps
  splicing and feature maps for RBPs
  ☆25Updated 3 years ago
• gagneurlab / scooby
  scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.
  ☆51Updated 2 months ago