Map large-scale single cells to the exact spatial locations
☆21Jun 9, 2026Updated 2 months ago
Alternatives and similar repositories for CMAP
Users that are interested in CMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- ☆17Mar 5, 2026Updated 5 months ago
- ☆19Jul 16, 2025Updated last year
- ☆14Jan 24, 2024Updated 2 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆76Dec 1, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Sep 30, 2024Updated last year
- Single-cell Spatial Transcriptomics Imputation via Style Transfer☆23Jun 3, 2026Updated 2 months ago
- ☆13Apr 16, 2026Updated 4 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- CellRank 2's reproducibility repository.☆16Sep 4, 2024Updated last year
- ☆14Mar 28, 2025Updated last year
- ☆20Updated this week
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆22Apr 27, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- ☆15Jul 25, 2025Updated last year
- ☆13Apr 27, 2022Updated 4 years ago
- Spatial omics analysis toolbox☆20Updated this week
- ☆17Apr 15, 2025Updated last year
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆25Jan 20, 2026Updated 7 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- ☆72Sep 16, 2025Updated 11 months ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆63May 30, 2024Updated 2 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆22May 28, 2026Updated 3 months ago
- Solutions to the labs and exercises in ISL.☆11Jan 21, 2019Updated 7 years ago
- ☆19May 5, 2024Updated 2 years ago
- Cell identification in high-resolution Spatial Transcriptomics☆16Dec 3, 2025Updated 8 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jul 30, 2026Updated last month
- TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …☆45Mar 10, 2024Updated 2 years ago
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Updated this week
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆50Oct 22, 2025Updated 10 months ago
- ☆15Jan 14, 2025Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆55Oct 31, 2024Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated 2 years ago
- ☆28Jun 4, 2023Updated 3 years ago