Alternatives and similar repositories for CMAP

Users that are interested in CMAP are comparing it to the libraries listed below

• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆28Updated last year
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• dpeerlab / ENVI
  ☆52Updated 3 months ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆27Updated last year
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆35Updated last month
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆34Updated 2 years ago
• yzf072 / spaTrack
  An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.
  ☆35Updated 9 months ago
• azizilab / DIISCO_public
  Publically accessible code for DIISCO method
  ☆12Updated 2 months ago
• KlugerLab / SIMVI
  ☆15Updated 6 months ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆22Updated 3 years ago
• biomed-AI / CellFM
  ☆90Updated 4 months ago
• bioinfo-biols / Flow2Spatial
  Flow2Spatial reconstructs spatial proteomics through transfer learning.
  ☆22Updated 7 months ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆26Updated last year
• TencentAILabHealthcare / pysodb
  ☆27Updated 2 years ago
• QuKunLab / SPACEL
  ☆60Updated last year
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆40Updated last year
• JiangBioLab / DeepCCI
  ☆21Updated 3 years ago
• siyuh / Squidiff
  ☆99Updated 2 months ago
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆47Updated 3 weeks ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• xryanglab / DeepLinc
  De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data
  ☆20Updated 3 years ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆49Updated 5 months ago
• madilabcode / scNET
  ☆59Updated 2 weeks ago
• sldyns / SpaHDmap
  Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping
  ☆13Updated this week
• sunericd / SpatialAgingClock
  ☆25Updated 9 months ago
• YiLab-SC / scHolography
  ☆11Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 5 months ago
• chenhcs / scResolve
  ☆13Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆25Updated 10 months ago