Alternatives and similar repositories for VILOCA:

Users that are interested in VILOCA are comparing it to the libraries listed below

• cihga39871 / Atria
  An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.
  ☆35Updated 2 months ago
• vpc-ccg / freddie
  Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
  ☆17Updated 2 years ago
• a-slide / MetaCompore
  Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing
  ☆9Updated 3 years ago
• WGLab / LongReadSum
  ☆14Updated this week
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆16Updated 3 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆31Updated 3 months ago
• seryrzu / unialigner
  ☆64Updated 9 months ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated last month
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆42Updated 3 months ago
• PacificBiosciences / HiFi-SVTopo
  Complex structural variant visualization for HiFi sequencing data
  ☆27Updated 2 months ago
• yanboANU / Kmer2SNP
  ☆26Updated 3 years ago
• simoncchu / GAPPadder
  GAPPadder is tool for closing gaps on draft genomes with short sequencing data
  ☆27Updated 7 years ago
• mpertea / stringtie2-initial-release
  Transcript assembly and quantification for RNA-Seq
  ☆8Updated 4 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆54Updated last year
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated 7 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆36Updated last month
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆29Updated 5 months ago
• HaploKit / Strainline
  Full-length de novo viral haplotype reconstruction from noisy long reads
  ☆17Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• cbg-ethz / shorah
  Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)
  ☆40Updated last year
• cbg-ethz / cojac
  ☆19Updated last month
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated last month
• hasindu2008 / sigtk
  A simple toolkit for manipulating nanopore signal data
  ☆18Updated 3 months ago
• human-pangenomics / hprc-tutorials
  ☆14Updated 9 months ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated last month
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆20Updated this week
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago