cbg-ethz / VILOCALinks
VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data
☆21Updated this week
Alternatives and similar repositories for VILOCA
Users that are interested in VILOCA are comparing it to the libraries listed below
Sorting:
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated 2 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- ☆19Updated last month
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆47Updated 6 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆36Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 2 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆27Updated 8 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- Population analysis PIPEline 🛠🧬☆20Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Recombination-free trees☆58Updated 3 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated 2 weeks ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 2 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Transfer coordinates across genomes☆23Updated last month
- catalog for long-read sequencing tools☆32Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last week