cbg-ethz / VILOCA
VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data
☆19Updated 2 weeks ago
Alternatives and similar repositories for VILOCA:
Users that are interested in VILOCA are comparing it to the libraries listed below
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Command line tool to plot genomic coverage from a BAM file☆13Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆35Updated last week
- Full-length de novo viral haplotype reconstruction from noisy long reads☆18Updated last year
- ☆19Updated 5 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆23Updated 2 months ago
- ☆17Updated 3 weeks ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 7 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 4 months ago
- ☆17Updated last year
- ☆41Updated last month
- ☆20Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated this week
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- CAncer Standards Long-read Evaluation☆25Updated 2 months ago
- ☆26Updated 3 years ago
- crab go snap snap☆39Updated last week
- Differential k-mer analysis☆36Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆37Updated 2 months ago
- Evaluating Nanopore-based bacterial variant calling☆18Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated 3 months ago
- Transfer coordinates across genomes☆23Updated 2 weeks ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated last week