lorrainea / MARS
MARS: improving Multiple circular sequence Alignment using Refined Sequences
☆29Updated 4 months ago
Alternatives and similar repositories for MARS:
Users that are interested in MARS are comparing it to the libraries listed below
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- orthology assignment using phylogenetic and network analyses☆46Updated 2 weeks ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A Nextflow pipeline for evaluating assembly quality☆30Updated last week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆40Updated 3 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆73Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- ☆61Updated last week
- Tiberius is a deep learning gene finder.☆52Updated this week
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆57Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated last year
- Fully automated generation of UCSC assembly hubs☆34Updated 5 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 5 years ago
- ☆31Updated 10 months ago
- perSVade: personalized Structural Variation detection☆38Updated 3 weeks ago
- Documentation for Evolview☆26Updated 3 years ago
- Visualize whole genome alignments as linear maps☆71Updated 6 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 5 years ago
- An R package designed for drawing gene arrow maps☆72Updated this week
- ☆28Updated 4 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated this week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 3 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year