lorrainea / MARS
MARS: improving Multiple circular sequence Alignment using Refined Sequences
☆29Updated 5 months ago
Alternatives and similar repositories for MARS:
Users that are interested in MARS are comparing it to the libraries listed below
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆40Updated 3 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆56Updated last year
- orthology assignment using phylogenetic and network analyses☆46Updated last month
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Visualize whole genome alignments as linear maps☆72Updated 6 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated 2 weeks ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated last month
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Reference-guided multiple sequence alignment of viral genomes☆66Updated 3 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated 2 weeks ago
- Linear-time de novo Long Read Assembler☆40Updated 2 months ago
- ☆27Updated 2 months ago
- ☆28Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆26Updated 5 years ago
- A local-haplotagging-based small and structural variant caller☆73Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆21Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆74Updated 2 weeks ago
- Error correction for Illumina RNA-seq reads☆66Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- MIRA sequence assembler☆28Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago