MARS: improving Multiple circular sequence Alignment using Refined Sequences
☆33May 2, 2025Updated last year
Alternatives and similar repositories for MARS
Users that are interested in MARS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 6 months ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 10 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆15Mar 6, 2023Updated 3 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 5 years ago
- Source code for MutPred2.0☆16Mar 27, 2025Updated last year
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Sep 17, 2022Updated 4 years ago
- ☆12May 6, 2022Updated 4 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- ☆13Sep 11, 2025Updated last year
- VBZ compression plugin for nanopore signal data☆44Apr 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆75May 20, 2022Updated 4 years ago
- ☆15Jun 6, 2023Updated 3 years ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆118Jul 21, 2026Updated 2 months ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Benchmarking pairwise aligners☆37Aug 26, 2026Updated last month
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- Minimal but speedy quality control for nanopore reads in Rust☆139Sep 16, 2024Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated last week
- visualising sequence similarity with Circos☆41Jul 1, 2019Updated 7 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Aug 3, 2026Updated 2 months ago
- ☆10Jan 18, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- A genome alignment and visualization system☆36Nov 15, 2020Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 6 years ago
- ☆21May 24, 2025Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- Just Annotate My Genome☆19May 21, 2026Updated 4 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago