lorrainea / MARSLinks
MARS: improving Multiple circular sequence Alignment using Refined Sequences
☆31Updated 8 months ago
Alternatives and similar repositories for MARS
Users that are interested in MARS are comparing it to the libraries listed below
Sorting:
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- k-mer learning materials☆83Updated 11 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Visualize whole genome alignments as linear maps☆74Updated 5 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆53Updated 3 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆89Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated this week
- A fork of exonerate: a generic tool for sequence alignment☆71Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- ☆68Updated 2 weeks ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆36Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- Gmove is a gene prediction tool☆21Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago