Graphical Representation of Ancestral Sequence Predictions
☆12Mar 6, 2023Updated 3 years ago
Alternatives and similar repositories for GRASP
Users that are interested in GRASP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Python framework for doing ancestral sequence reconstruction☆43Mar 20, 2026Updated 3 weeks ago
- A Python API for managing genotype-phenotype map data☆12Aug 18, 2023Updated 2 years ago
- Contact map alignment☆16May 10, 2018Updated 7 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Reference-free analysis of genetic architecture☆22Sep 21, 2024Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 3 months ago
- ☆15Apr 3, 2025Updated last year
- ☆24Mar 9, 2026Updated last month
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- Automated construction of protein chimeras and their analysis.☆14Sep 29, 2023Updated 2 years ago
- Shepherd: accurate clustering for correcting DNA barcode errors: https://doi.org/10.1093/bioinformatics/btac395☆11Nov 13, 2023Updated 2 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- ☆14Oct 29, 2024Updated last year
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 2 months ago
- ☆12Mar 1, 2026Updated last month
- ☆16Oct 3, 2023Updated 2 years ago
- ☆18Jan 19, 2026Updated 2 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆49Nov 4, 2025Updated 5 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NAMD QM/MM Tutorial on Free Energy Profile of Reaction Mechanisms☆15Sep 14, 2018Updated 7 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- ☆35Jun 26, 2025Updated 9 months ago
- Fast protein structure searching or your money back☆118Mar 17, 2026Updated 3 weeks ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Repository for material from the 2020 MC/MD Summer Workshop☆14Jul 12, 2024Updated last year
- CLANS_2 is a Python-based program for clustering sequences in the 2D or 3D space, based on their sequence similarities. CLANS visualizes …☆26Dec 5, 2024Updated last year
- Consolidated repository to perform RLXF☆40Mar 12, 2026Updated 3 weeks ago
- ☆15Jun 25, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- A Full Featured Multiple Sequence Alignment Editor.☆26May 21, 2018Updated 7 years ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated last year
- A SNP Visualizer - Javascript☆18Oct 22, 2014Updated 11 years ago
- ☆16Mar 28, 2025Updated last year
- ☆13Aug 18, 2023Updated 2 years ago
- A collection of tutorials for the python implementation of Dynamical Network Analysis☆15Aug 6, 2025Updated 8 months ago
- ☆13Mar 26, 2024Updated 2 years ago