bxlab / bx-pythonLinks
Tools for manipulating biological data, particularly multiple sequence alignments
☆159Updated 2 weeks ago
Alternatives and similar repositories for bx-python
Users that are interested in bx-python are comparing it to the libraries listed below
Sorting:
- Sequana: a set of Snakemake NGS pipelines☆151Updated last month
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆101Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- Parsing tools for GTF (gene transfer format) files☆122Updated 10 months ago
- All source code of the crispor.org website☆84Updated last week
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Python biomart API☆69Updated 2 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- Fast multi-line FASTA/Q reader in several programming languages☆176Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- PAired-eND Assembler for DNA sequences☆137Updated 5 years ago
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- GFF and GTF file manipulation and interconversion☆311Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆163Updated 2 weeks ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆125Updated last year
- Module for embedding igv.js in an IPython notebook☆80Updated 10 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- Simple oligo analysis and primer design☆186Updated this week
- small rna-seq analysis package☆30Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆174Updated last year