Tools for manipulating biological data, particularly multiple sequence alignments
☆162Oct 29, 2026Updated this week
Alternatives and similar repositories for bx-python
Users that are interested in bx-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- GFF and GTF file manipulation and interconversion☆321Oct 21, 2026Updated last week
- cython + htslib == fast VCF and BCF processing☆451Sep 10, 2026Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆907Oct 3, 2026Updated 3 weeks ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126May 4, 2026Updated 5 months ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆254Sep 29, 2026Updated last month
- Tools to process and analyze deep sequencing data.☆772Updated this week
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆687Oct 2, 2026Updated last month
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Aug 26, 2026Updated 2 months ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆243Aug 11, 2021Updated 5 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,497Updated this week
- PHAST☆87Jul 25, 2026Updated 3 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,055Jun 10, 2026Updated 4 months ago
- ☆16May 7, 2023Updated 3 years ago
- ☆83Jun 2, 2023Updated 3 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆197Oct 1, 2026Updated last month
- Efficient pythonic random access to fasta subsequences☆489Updated this week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,262May 19, 2026Updated 5 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆911Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Dec 11, 2017Updated 8 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 4 years ago
- Mummer alignment tool☆579Feb 4, 2025Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆505Jul 7, 2026Updated 3 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 7 months ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- nim wrapper for htslib for parsing genomics data files☆159Sep 30, 2026Updated last month
- Fast alignment and preprocessing of chromatin profiles☆229Mar 20, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆129Apr 20, 2026Updated 6 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆214May 14, 2020Updated 6 years ago
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- UCSC command line bioinformatic utilities☆190Jul 31, 2024Updated 2 years ago
- A Variant Call Format reader for Python.☆420Sep 22, 2023Updated 3 years ago
- Performant Pythonic GenomicRanges☆492Updated this week