bxlab / bx-pythonLinks
Tools for manipulating biological data, particularly multiple sequence alignments
☆158Updated 3 weeks ago
Alternatives and similar repositories for bx-python
Users that are interested in bx-python are comparing it to the libraries listed below
Sorting:
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆97Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- All source code of the crispor.org website☆79Updated 7 months ago
- Python biomart API☆68Updated 2 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆116Updated 8 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 2 months ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆159Updated last week
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 3 months ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Fast HLA type inference from whole-genome data☆136Updated 4 months ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆171Updated 9 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆173Updated last year
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆93Updated 2 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- liftover for python, made fast with cython☆89Updated 3 months ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- small rna-seq analysis package☆30Updated 2 years ago
- Module for embedding igv.js in an IPython notebook☆78Updated 6 months ago
- GFF and GTF file manipulation and interconversion☆305Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- Jupyter notebook based genomic data visualization toolkit.☆246Updated 4 months ago