A rapid and low-memory multiple-genome aligner for closely related genomes
☆25Sep 3, 2025Updated last year
Alternatives and similar repositories for HAlign-G
Users that are interested in HAlign-G are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆35Aug 21, 2026Updated last month
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- ☆58Jun 12, 2025Updated last year
- fork of the GPU genome aligner☆40Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- ☆23Jan 13, 2026Updated 8 months ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆19Updated this week
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- High throughput python tool for mining and analysis of gene duplications.☆17Jul 30, 2026Updated last month
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- Phyling: phylogenetic inference from annotated genomes☆33Updated this week
- FastOMA is a scalable software package to infer orthology relationship.☆102Sep 14, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆45Dec 11, 2025Updated 9 months ago
- Telomere compliment tools☆27Nov 17, 2025Updated 10 months ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Jul 12, 2020Updated 6 years ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 1, 2026Updated 3 weeks ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 10 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 2 months ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆26Aug 14, 2026Updated last month
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆15Mar 14, 2023Updated 3 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 10 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆43Jun 3, 2025Updated last year
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 10 months ago
- plane sweep filtering genome alignments☆24Updated this week
- ☆18Jan 29, 2025Updated last year
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆30Jul 29, 2025Updated last year
- Portable solution to generate genome alignment chains using lastz☆71Sep 4, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆43Aug 22, 2026Updated last month
- ☆28May 12, 2026Updated 4 months ago
- ☆83Jun 2, 2023Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Updated this week
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- Neural network classification of TE☆103Apr 3, 2026Updated 5 months ago