PacificBiosciences / pbbam
PacBio BAM C++ library
☆21Updated last year
Alternatives and similar repositories for pbbam:
Users that are interested in pbbam are comparing it to the libraries listed below
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- ☆35Updated 5 years ago
- new repo☆28Updated 3 years ago
- ☆47Updated 4 years ago
- ☆22Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- UCSC Nanopore☆43Updated 5 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- ☆79Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 9 months ago
- SV genotyping with long reads☆40Updated last year
- ☆48Updated 9 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- ☆51Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Toolkit for genome-wide analysis of tandem repeats☆57Updated last month
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year