PacificBiosciences / pbbamLinks
PacBio BAM C++ library
☆21Updated 2 years ago
Alternatives and similar repositories for pbbam
Users that are interested in pbbam are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Structural variant caller☆55Updated 3 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- ☆46Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- RUFUS k-mer based genomic variant detection☆54Updated this week
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago