PacBio BAM C++ library
☆20Aug 14, 2023Updated 2 years ago
Alternatives and similar repositories for pbbam
Users that are interested in pbbam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Modular Aligner and The Modular SV Caller☆46Jul 18, 2023Updated 2 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- VNTR annotation using motif selection☆41Mar 17, 2026Updated last week
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 5 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Aug 1, 2021Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated last year
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated 2 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last month
- De novo clustering of long transcript reads into genes☆70Apr 27, 2025Updated 11 months ago
- Genome Pair Rapid Dotter☆67Sep 2, 2021Updated 4 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆88Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- ☆18Jan 24, 2018Updated 8 years ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆17Mar 18, 2023Updated 3 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 7 months ago
- Experimental String Graph construction and processing☆26Aug 14, 2023Updated 2 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆15Jul 20, 2023Updated 2 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- ☆11Sep 17, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆287Feb 4, 2025Updated last year
- ☆315Jan 15, 2026Updated 2 months ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Oct 20, 2021Updated 4 years ago
- ☆11Dec 15, 2025Updated 3 months ago