Alternatives and similar repositories for alan:

Users that are interested in alan are comparing it to the libraries listed below

• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆119Updated 5 months ago
• KatyBrown / CIAlign
  ☆122Updated 5 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆146Updated this week
• AstrobioMike / bit
  Bioinformatics Tools
  ☆82Updated last month
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆69Updated 2 months ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆109Updated last year
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆50Updated 2 years ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆106Updated 10 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆86Updated last year
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆85Updated 2 weeks ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆66Updated 3 years ago
• arvestad / alv
  A console-based alignment viewer
  ☆107Updated this week
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆104Updated last week
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆100Updated 2 weeks ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆71Updated last year
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆57Updated 2 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆58Updated 2 weeks ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆104Updated 3 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆75Updated last year
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆70Updated last week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last week
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆53Updated 6 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated 10 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆130Updated this week
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆111Updated last month
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆77Updated 2 months ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated 10 months ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 2 years ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆81Updated 2 years ago