Alternatives and similar repositories for alan

Users that are interested in alan are comparing it to the libraries listed below

• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆129Updated last year
• AstrobioMike / bit
  Bioinformatics Tools
  ☆90Updated 2 weeks ago
• KatyBrown / CIAlign
  ☆132Updated last year
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆52Updated 2 years ago
• arvestad / alv
  A console-based alignment viewer
  ☆116Updated 4 months ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 4 months ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆112Updated 10 months ago
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆84Updated 7 years ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆135Updated 3 weeks ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated 2 months ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆116Updated last year
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆121Updated this week
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆78Updated last week
• pirovc / genome_updater
  Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redunda…
  ☆160Updated 10 months ago
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆84Updated 3 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆90Updated 2 weeks ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• AliView / AliView
  Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
  ☆142Updated 7 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆152Updated 2 weeks ago
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆77Updated 2 years ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated 2 years ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆78Updated 2 months ago
• rcedgar / usearch12
  Open-source usearch
  ☆120Updated 2 months ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆120Updated 3 weeks ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆106Updated last week
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆158Updated last year
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 2 months ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆174Updated this week
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆97Updated 2 years ago