Alternatives and similar repositories for alan

Users that are interested in alan are comparing it to the libraries listed below

• KatyBrown / CIAlign
  ☆133Updated last year
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆132Updated last year
• arvestad / alv
  A console-based alignment viewer
  ☆117Updated 7 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆51Updated 2 years ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆90Updated last week
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆117Updated last year
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆92Updated 5 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 4 years ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 7 months ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆143Updated 2 months ago
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆80Updated 5 months ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆112Updated last year
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆156Updated last month
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆124Updated 3 weeks ago
• microgenomics / tutorials
  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…
  ☆84Updated 7 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆130Updated this week
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆95Updated 3 months ago
• epi2me-labs / wf-basecalling
  ☆47Updated last month
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆157Updated 2 months ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆108Updated last week
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆86Updated 3 years ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆111Updated 6 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆67Updated last week
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆81Updated 3 months ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆63Updated 5 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆80Updated last month
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆174Updated this week