mpdunne / alanLinks
Alignment viewer for linux terminal
☆124Updated 3 months ago
Alternatives and similar repositories for alan
Users that are interested in alan are comparing it to the libraries listed below
Sorting:
- Download files from NCBI Entrez by accession☆132Updated last year
- Bioinformatics Tools☆90Updated last month
- ☆133Updated last year
- Antibiotic resistance prediction in minutes☆112Updated last year
- A robust, extensible metagenomics pipeline☆174Updated this week
- A console-based alignment viewer☆117Updated 6 months ago
- Programmatically interact with the GISAID database.☆79Updated 4 months ago
- MGnify genome analysis pipeline☆109Updated last week
- What should perfect bioinformatic tools be like?☆142Updated last month
- (Meta-)genome screening for functional and natural product gene sequences☆98Updated last week
- An imagemagick-like frontend to Biopython SeqIO☆117Updated last year
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆84Updated 7 years ago
- Simple bacterial assembly and annotation pipeline☆80Updated last month
- Find clustered hits from a BLAST search☆127Updated last month
- Fast and flexible ORF finder☆76Updated 3 years ago
- An R package designed for drawing gene arrow maps☆93Updated 2 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 6 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Updated 4 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆91Updated 4 months ago
- Efficient phylogenetic clustering of viral sequences☆90Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆166Updated 2 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆100Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆156Updated 2 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆162Updated last month
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Bioinformatics tool for Locus Visualisation☆148Updated last month
- Open-source usearch☆127Updated 4 months ago
- gutSMASH☆55Updated 2 months ago