fhlab / UMIC-seq
Nanopore UMI-linked consensus sequencing
☆12Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for UMIC-seq
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆21Updated 7 months ago
- BiG-MEx implementation as Docker images and R packages☆12Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆25Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆11Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- ☆30Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆20Updated 3 weeks ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆14Updated 2 years ago
- Metagenomics microbial abundance quantification☆27Updated 2 years ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆16Updated 4 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- ☆17Updated 5 months ago
- KBase distribution module for RASTtk.☆13Updated 4 years ago
- ☆15Updated 5 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆14Updated 2 months ago
- ☆13Updated 8 months ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- ☆13Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 5 years ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆12Updated last year
- A repo to reproduce the experiments in the YACHT manuscript☆10Updated last year