fhlab / UMIC-seq
Nanopore UMI-linked consensus sequencing
☆15Updated 4 years ago
Alternatives and similar repositories for UMIC-seq:
Users that are interested in UMIC-seq are comparing it to the libraries listed below
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 weeks ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 2 weeks ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 8 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- Nail is an Alignment Inference tooL☆45Updated last week
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Python bindings for the TaxonKit library☆36Updated 2 weeks ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆36Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆16Updated 2 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆20Updated 11 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆13Updated 5 months ago
- ☆17Updated 2 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 weeks ago
- ☆25Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated 3 weeks ago
- ☆31Updated 3 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆20Updated this week
- Protein Sequence Annotation with Language Models☆19Updated 6 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆23Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- KBase distribution module for RASTtk.☆13Updated 4 years ago