canceromics / MeRIPseqPipeLinks
MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
☆41Updated last year
Alternatives and similar repositories for MeRIPseqPipe
Users that are interested in MeRIPseqPipe are comparing it to the libraries listed below
Sorting:
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- direct comparison of circular and linear RNA expression☆22Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆72Updated last week
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆31Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated last week
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- Demultiplexes a fastq.☆47Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Tutorial Website☆61Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated 10 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- ☆59Updated 3 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 weeks ago
- ☆87Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- Find circRNAs in RNA-seq data.☆15Updated 9 years ago
- ☆62Updated 5 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated last month
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆71Updated 3 years ago