canceromics / MeRIPseqPipe
MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
☆33Updated 7 months ago
Alternatives and similar repositories for MeRIPseqPipe:
Users that are interested in MeRIPseqPipe are comparing it to the libraries listed below
- A list of alternative splicing analysis resources☆40Updated 2 months ago
- A Perl/R pipeline for plotting metagenes☆36Updated 3 years ago
- Tutorial Website☆55Updated 3 years ago
- ☆20Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 8 months ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 8 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆48Updated 2 years ago
- ☆40Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 6 months ago
- ☆53Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆54Updated last year
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- New version of JACUSA -> 2.0☆23Updated this week
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆61Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 5 months ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆61Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆27Updated 4 years ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 5 months ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- bioinformatic pipeline for GLORI☆18Updated 8 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆104Updated 5 months ago
- ☆58Updated 5 months ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆21Updated 3 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 6 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- ☆38Updated 4 years ago