bcgsc / poriLinks
Platform for Oncogenomic Reporting and Interpretation (PORI)
☆32Updated last year
Alternatives and similar repositories for pori
Users that are interested in pori are comparing it to the libraries listed below
Sorting:
- Python package to annotate and visualize gene fusions.☆63Updated 9 months ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 4 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Chimeric transcript discovery☆9Updated 7 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- ☆23Updated 6 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆11Updated last year
- ☆39Updated 2 weeks ago
- Builds a PEP from SRA or GEO accessions☆52Updated this week
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- ☆38Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Comprehensive analysis of small RNA sequencing data☆32Updated 2 months ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆14Updated 3 years ago
- ☆20Updated 5 years ago
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆75Updated last month
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆39Updated 2 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆83Updated last month
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- An R package to time somatic mutations☆62Updated 4 years ago