MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.
☆22Jun 18, 2021Updated 4 years ago
Alternatives and similar repositories for meripseqpipe
Users that are interested in meripseqpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆47May 20, 2024Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 5 years ago
- Customer workshop materials☆19Apr 8, 2026Updated last week
- A pipeline to process m6A-seq data and down stream analysis.☆45Aug 5, 2020Updated 5 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 6 years ago
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated 9 months ago
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- Sample-specific CircRNA Viewer☆11Aug 15, 2018Updated 7 years ago
- Rscripts collection for ploting in daily research life☆10Jan 15, 2021Updated 5 years ago
- HOT regions paper☆11Jun 18, 2019Updated 6 years ago
- The project for analyzing differential methylation of MeRIP-seq data☆24Sep 5, 2023Updated 2 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 4 months ago
- ☆17Sep 28, 2022Updated 3 years ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆26Mar 15, 2023Updated 3 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆53Jan 9, 2020Updated 6 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"☆14Jul 28, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- m(6)A methylation analysis☆10Mar 9, 2019Updated 7 years ago
- Code for Stress and Affect Detection on Resource-Constrained Devices☆12Jan 24, 2021Updated 5 years ago
- The AI in Genomics program is a twelve week initiative that allows for students to get hands on experience. Students are taught different…☆10Jan 29, 2021Updated 5 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆63Mar 18, 2024Updated 2 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆23Jan 30, 2026Updated 2 months ago
- The DNAnexus incremental upload script packaged as an Ansible Role☆13Apr 7, 2025Updated last year
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A place to put docker build files☆13Oct 3, 2023Updated 2 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16May 2, 2020Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 6 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago