Alternatives and similar repositories for meripseqpipe:

Users that are interested in meripseqpipe are comparing it to the libraries listed below

• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 4 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆31Updated 5 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 6 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆30Updated last year
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆23Updated 2 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆38Updated this week
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated last month
• mhalushka / miRge3.0
  Comprehensive analysis of small RNA sequencing data
  ☆30Updated 8 months ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆28Updated 3 months ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆26Updated 2 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆29Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆38Updated 3 years ago
• NBISweden / workshop-RNAseq
  Workshop • Analysis of RNA-seq data
  ☆35Updated 11 months ago
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆27Updated 3 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆39Updated last year
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆26Updated 4 months ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆20Updated 4 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 3 years ago
• TobiTekath / DTUrtle
  Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
  ☆20Updated 10 months ago
• stjude / ChIPseqSpikeInFree
  A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
  ☆31Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆21Updated last year
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• egaffo / CirComPara
  A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
  ☆14Updated 4 years ago
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆19Updated 5 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago