Alternatives and similar repositories for meripseqpipe

Users that are interested in meripseqpipe are comparing it to the libraries listed below

• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆30Updated 3 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• mhalushka / miRge3.0
  Comprehensive analysis of small RNA sequencing data
  ☆31Updated 3 weeks ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆30Updated 5 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆23Updated 3 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 6 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆33Updated 2 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆41Updated last year
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated 2 weeks ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆41Updated 2 months ago
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆21Updated 4 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆31Updated last year
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 11 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆17Updated 6 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆21Updated last year
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆28Updated last month
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆43Updated 7 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆16Updated 3 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 4 years ago
• YangLab / CLEAR
  direct comparison of circular and linear RNA expression
  ☆23Updated 4 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆18Updated last year