lazyky / meripseqpipe
MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.
☆21Updated 3 years ago
Alternatives and similar repositories for meripseqpipe
Users that are interested in meripseqpipe are comparing it to the libraries listed below
Sorting:
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- ☆23Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆21Updated 4 years ago
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- documentation for trackViewer☆29Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆40Updated last year
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Motif manipulation functions for R.☆28Updated 2 weeks ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- workshop website on readthedocs☆19Updated 2 weeks ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 9 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Comprehensive analysis of small RNA sequencing data☆31Updated 10 months ago
- R package wrapping bedtools☆40Updated last month
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago