MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.
☆23Jun 18, 2021Updated 5 years ago
Alternatives and similar repositories for meripseqpipe
Users that are interested in meripseqpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆47May 20, 2024Updated 2 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 6 years ago
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- Customer workshop materials☆19May 13, 2026Updated 5 months ago
- A pipeline to process m6A-seq data and down stream analysis.☆46Aug 5, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Jan 21, 2023Updated 3 years ago
- Rscripts collection for ploting in daily research life☆10Jan 15, 2021Updated 5 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 4 years ago
- Sample-specific CircRNA Viewer☆12Aug 15, 2018Updated 8 years ago
- The project for analyzing differential methylation of MeRIP-seq data☆25Sep 5, 2023Updated 3 years ago
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 11 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Code for Stress and Affect Detection on Resource-Constrained Devices☆13Jan 24, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 3 months ago
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆26Mar 15, 2023Updated 3 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆52Jan 9, 2020Updated 6 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 4 years ago
- Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"☆14Jul 28, 2020Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways☆62Updated this week
- The DNAnexus incremental upload script packaged as an Ansible Role☆13Apr 7, 2025Updated last year
- A place to put docker build files☆14Sep 11, 2026Updated last month
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆17Sep 28, 2022Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Jul 5, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- ☆11Aug 6, 2019Updated 7 years ago
- sci palettes for matplotlib/seaborn☆10Feb 14, 2022Updated 4 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated last month