junjunlab / GetTsiteLinks
extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.
☆10Updated 3 years ago
Alternatives and similar repositories for GetTsite
Users that are interested in GetTsite are comparing it to the libraries listed below
Sorting:
- An elegant package to visualize gene structures☆82Updated 2 years ago
- An R package to visualize bigwigs.☆32Updated 3 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆11Updated last year
- Extract gene length based on featureCount calculation gene nonredundant exon length method.☆18Updated 3 years ago
- Tutorial Website☆60Updated 4 years ago
- Pipeline for Cut&Tag analysis☆24Updated 7 months ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- ☆88Updated 4 years ago
- ☆71Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆33Updated last week
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 4 months ago
- Extract Sequence from Genome According to Annotation File☆38Updated 7 months ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆56Updated this week
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆18Updated last year
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆91Updated 2 years ago
- Transcriptomics Visualization R package.☆74Updated 7 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆60Updated 2 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 3 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ChIP-seq analysis notes from Tommy Tang☆19Updated 9 years ago
- Multiscale embedded gene co-expression network analysis☆56Updated last year
- Hypoxia associated molecular feature analysis☆35Updated 6 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Profile and Heatmap Visualization by Using ggplot2 and grid☆10Updated last year
- Basic workflow for ATAC-seq analysis☆90Updated last year