junjunlab / GetTsite
extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.
☆10Updated 3 years ago
Alternatives and similar repositories for GetTsite:
Users that are interested in GetTsite are comparing it to the libraries listed below
- An R package to visualize bigwigs.☆29Updated 2 years ago
- An elegant package to visualize gene structures☆73Updated last year
- Extract gene length based on featureCount calculation gene nonredundant exon length method.☆17Updated 3 years ago
- Profile and Heatmap Visualization by Using ggplot2 and grid☆10Updated last year
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- Extract Sequence from Genome According to Annotation File☆32Updated last month
- Creating Circular Graph with the Grammar of GGplot2☆18Updated last year
- Tutorial Website☆56Updated 4 years ago
- Pipeline for Cut&Tag analysis☆17Updated last month
- A R package for advanced single cell data viz☆64Updated last year
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- Visualizing SingleCell data Using GGplot2☆31Updated 5 months ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆49Updated 5 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 7 months ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆17Updated 9 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆44Updated 7 months ago
- ☆10Updated 7 years ago
- A step-by-step tutorial for Weighted correlation network analysis (WGCNA)☆64Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆56Updated last year
- ☆64Updated 2 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- release version☆51Updated 2 years ago
- Transcriptomics Visualization R package.☆69Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated 2 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ☆19Updated this week
- ☆42Updated 3 years ago