Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data
☆18Nov 26, 2021Updated 4 years ago
Alternatives and similar repositories for DeviCNV
Users that are interested in DeviCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 9 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Sep 27, 2021Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Apr 17, 2026Updated 3 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 6 years ago
- Transfer Learning for Survival Analysis via Efficient L2,1-norm Regularized Cox Regression☆13Sep 18, 2016Updated 9 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆60Jul 14, 2026Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A nextflow pipeline for calling exome CNVs☆14Jun 22, 2026Updated last month
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Oct 30, 2025Updated 8 months ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 9 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 22, 2026Updated last month
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated last month
- Curated list of resources for variant prioritization☆15Nov 18, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Jul 13, 2026Updated last week
- The implementation of gradient boosting machine for concordance index learning.☆16Oct 8, 2013Updated 12 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- RNAseq pipeline for alternative splicing junctions☆15Mar 26, 2026Updated 3 months ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- Geneyx Analysis API☆12Jun 10, 2026Updated last month
- VariantGrid public repo☆26Updated this week
- A simple observation count database☆11Jan 13, 2026Updated 6 months ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated last year
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆15Jul 6, 2026Updated 2 weeks ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 2 months ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆90Jul 13, 2026Updated last week
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization fo…☆21Oct 27, 2022Updated 3 years ago