SD-Genomics / DeviCNVLinks
Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data
☆18Updated 4 years ago
Alternatives and similar repositories for DeviCNV
Users that are interested in DeviCNV are comparing it to the libraries listed below
Sorting:
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- QDNAseq.hg38: QDNAseq bin annotation for hg38☆16Updated last month
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- structure detection program☆18Updated last year
- ☆46Updated 6 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- ☆38Updated 4 years ago
- ☆23Updated 11 months ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- ☆26Updated last year
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- CN-Learn☆30Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Updated 5 years ago