jsalignon / cactusLinks
Chromatin ACcessibility and Transcriptomics Unifying Software
☆17Updated last year
Alternatives and similar repositories for cactus
Users that are interested in cactus are comparing it to the libraries listed below
Sorting:
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated last week
- ☆17Updated last year
- interactive plots for differential expression analysis☆34Updated 5 months ago
- Workflow for Sequenza, cellularity and ploidy☆24Updated 3 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 3 years ago
- Nascent Transcription Processing Pipeline☆20Updated last month
- Bedfile perturbation tool☆17Updated last month
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- GWAS and rare variants tests at high speed using regenie☆16Updated 3 weeks ago
- ☆23Updated 4 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Updated 3 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 4 months ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- iread☆25Updated 4 years ago
- ☆23Updated last week
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆20Updated 9 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- RNA-seq analysis scripts☆15Updated 2 weeks ago
- ☆20Updated 5 months ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- ☆17Updated 3 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- FunctionaL Omics Processing platform☆13Updated last year