jsalignon / cactusLinks
Chromatin ACcessibility and Transcriptomics Unifying Software
☆17Updated 10 months ago
Alternatives and similar repositories for cactus
Users that are interested in cactus are comparing it to the libraries listed below
Sorting:
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- ☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- interactive plots for differential expression analysis☆34Updated 3 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last year
- ☆20Updated 3 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Comprehensive Human Expressed SequenceS☆18Updated 2 months ago
- ☆12Updated 5 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 months ago
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 6 months ago
- Filter and prioritize fusion calls☆20Updated 11 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆20Updated 7 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Nascent Transcription Processing Pipeline☆20Updated 2 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 2 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Bedfile perturbation tool☆17Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 3 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Updated 2 years ago