jsalignon / cactusLinks
Chromatin ACcessibility and Transcriptomics Unifying Software
☆17Updated 10 months ago
Alternatives and similar repositories for cactus
Users that are interested in cactus are comparing it to the libraries listed below
Sorting:
- Workflow for Sequenza, cellularity and ploidy☆20Updated last week
- interactive plots for differential expression analysis☆34Updated 2 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 2 months ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- ☆17Updated last year
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- ☆12Updated 5 years ago
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆13Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 2 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆20Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- cfDNA analysis workflow☆21Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆18Updated last month
- Scripts used in the analysis of C elegans dRNAseq data☆14Updated last year
- FunctionaL Omics Processing platform☆13Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Filter and prioritize fusion calls☆20Updated 10 months ago
- Rapid and accurate ancestry inference using SNVs.☆20Updated 2 weeks ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago