ekg / ogapLinks
gap opening realigner for BAM data streams
☆18Updated 13 years ago
Alternatives and similar repositories for ogap
Users that are interested in ogap are comparing it to the libraries listed below
Sorting:
- ☆36Updated 5 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Sample Contamination Estimate from VCF☆21Updated 11 months ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 7 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- ☆35Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- drunk on perbase pileups and lua expressions☆19Updated 5 months ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆16Updated 3 years ago
- ☆13Updated 9 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago