ekg / ogap
gap opening realigner for BAM data streams
☆18Updated 12 years ago
Alternatives and similar repositories for ogap:
Users that are interested in ogap are comparing it to the libraries listed below
- ☆14Updated 9 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 9 months ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- ☆37Updated 4 years ago
- Integrated Variant Caller☆17Updated 6 years ago
- ☆13Updated last year
- ☆19Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆18Updated 2 months ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds