ding-lab / somaticwrapperLinks
Detect somatic variants from tumor and normal WGS/WXS data
☆18Updated last month
Alternatives and similar repositories for somaticwrapper
Users that are interested in somaticwrapper are comparing it to the libraries listed below
Sorting:
- ☆44Updated 6 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆13Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated 8 months ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆12Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- Define regions in the genome☆31Updated 3 years ago
- WES HLA Typing based on multiple alternative tools☆17Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Cellsnake tool main repo☆33Updated last year
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- ☆40Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆19Updated 6 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆28Updated 4 years ago
- RAGE-seq scripts☆18Updated 3 years ago