ding-lab / somaticwrapperLinks
Detect somatic variants from tumor and normal WGS/WXS data
☆19Updated 3 months ago
Alternatives and similar repositories for somaticwrapper
Users that are interested in somaticwrapper are comparing it to the libraries listed below
Sorting:
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022☆24Updated 3 years ago
- ☆44Updated 7 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- A continually expanding collection of RNA-seq tools☆53Updated 3 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 5 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆23Updated 11 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Updated 4 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- A rust framework to make using alevin-fry even simpler☆61Updated 9 months ago
- Improved Ribo-seq enables identification of cryptic translation events☆16Updated 7 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- documentation for trackViewer☆29Updated 6 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Updated last year
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- Dockstore implementation of CGP core WGS analysis☆30Updated 5 years ago
- ☆15Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago