BISulfite-seq CUI Toolkit
☆26Feb 17, 2026Updated last month
Alternatives and similar repositories for biscuit
Users that are interested in biscuit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 6 months ago
- ☆16Jun 27, 2025Updated 9 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Nov 10, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read level DNA methylation analysis of bisulfite converted sequencing data☆19Feb 23, 2026Updated last month
- CoRAL: Reconstruction of focal amplifications with long reads☆24Apr 7, 2026Updated last week
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 10 months ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated this week
- A (mostly) universal methylation extractor for BS-seq experiments.☆178Jun 21, 2024Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆30May 5, 2023Updated 2 years ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- ☆55Mar 9, 2022Updated 4 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆10Jul 13, 2022Updated 3 years ago
- Integral analysis of diversity based on Hill numbers☆11Feb 8, 2021Updated 5 years ago
- ☆51Jan 4, 2023Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 4 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆16Jan 15, 2025Updated last year
- ☆25Jan 18, 2022Updated 4 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Find CNVs in single cell sequencing data.☆19Apr 4, 2026Updated last week
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Feb 27, 2026Updated last month
- FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.☆36Mar 9, 2026Updated last month
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆22May 11, 2023Updated 2 years ago
- ☆23Dec 17, 2020Updated 5 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆187Mar 25, 2026Updated 3 weeks ago
- ☆22Mar 20, 2026Updated 3 weeks ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆116Apr 2, 2025Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆20Feb 16, 2026Updated 2 months ago
- ☆31Mar 5, 2024Updated 2 years ago
- CWL for GDC DNASeq workflows☆23Mar 30, 2026Updated 2 weeks ago
- Tools for analyzing DNA methylation data☆44Feb 15, 2026Updated 2 months ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- ☆29Oct 17, 2023Updated 2 years ago