BISulfite-seq CUI Toolkit
☆26Feb 17, 2026Updated 2 weeks ago
Alternatives and similar repositories for biscuit
Users that are interested in biscuit are comparing it to the libraries listed below
Sorting:
- ☆16Jun 27, 2025Updated 8 months ago
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 4 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Nov 10, 2021Updated 4 years ago
- ☆10Jul 13, 2022Updated 3 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- ☆50Jan 4, 2023Updated 3 years ago
- Updated and optimized fork of BSMAP☆23Dec 28, 2020Updated 5 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Jan 6, 2026Updated last month
- Reconstruction of focal amplifications with long reads☆24Nov 2, 2025Updated 4 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆29May 5, 2023Updated 2 years ago
- ☆54Mar 9, 2022Updated 3 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Jun 21, 2024Updated last year
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 9 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Feb 26, 2026Updated last week
- ☆31Mar 5, 2024Updated 2 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- ☆21Feb 5, 2026Updated last month
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆183Feb 24, 2026Updated last week
- ☆16Jan 15, 2025Updated last year
- ☆23Jan 20, 2021Updated 5 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Read level DNA methylation analysis of bisulfite converted sequencing data☆18Feb 23, 2026Updated last week
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Find CNVs in single cell sequencing data.☆18Apr 4, 2023Updated 2 years ago
- Tools for analyzing DNA methylation data☆44Feb 15, 2026Updated 2 weeks ago
- ☆18Nov 15, 2021Updated 4 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆22Apr 24, 2017Updated 8 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Feb 24, 2026Updated last week
- Quantifying copy number signatures from absolute copy number profiles☆27Jul 23, 2025Updated 7 months ago
- Python module for parsing, writing, aligning, and manipulating glycan structrures☆10Updated this week
- Toolkit for single-cell copy number analysis☆30Dec 15, 2025Updated 2 months ago
- ☆27Updated this week
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21May 11, 2023Updated 2 years ago
- Automatic annotation of single-cell RNA-seq data from the literature☆45Jul 20, 2025Updated 7 months ago