Jfortin1 / HiC_AB_Compartments
☆13Updated 8 years ago
Alternatives and similar repositories for HiC_AB_Compartments
Users that are interested in HiC_AB_Compartments are comparing it to the libraries listed below
Sorting:
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Updated 8 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Updated 2 years ago
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- ☆28Updated last year
- ☆23Updated 3 years ago
- ☆24Updated 9 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- ☆26Updated last month
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆14Updated 6 years ago
- ☆21Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 9 months ago
- BISulfite-seq CUI Toolkit☆19Updated this week
- Read level DNA methylation analysis of bisulfite converted sequencing data☆18Updated last year
- Poisson-based algorithm for stable inference of DNA Structure☆36Updated 3 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆27Updated 2 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- ☆13Updated 7 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆22Updated 5 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- ☆25Updated 11 months ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago