Jfortin1 / HiC_AB_CompartmentsView external linksLinks
☆13Jan 18, 2017Updated 9 years ago
Alternatives and similar repositories for HiC_AB_Compartments
Users that are interested in HiC_AB_Compartments are comparing it to the libraries listed below
Sorting:
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- ☆16Jan 14, 2026Updated last month
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Nov 9, 2024Updated last year
- GENome Organisation Visual Analytics☆15Dec 24, 2021Updated 4 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- ☆22Updated this week
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- ☆16Apr 9, 2021Updated 4 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆19Jul 30, 2025Updated 6 months ago
- ☆76Jun 4, 2021Updated 4 years ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆25Updated this week
- ☆25Jan 18, 2022Updated 4 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 6 years ago
- Gene Ontology subgraph visualizations☆20Jan 6, 2026Updated last month
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆25Jul 8, 2025Updated 7 months ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Tools and Data related to Enzymatic Methylation Sequencing☆30Jan 25, 2026Updated 3 weeks ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Oct 8, 2021Updated 4 years ago
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Apr 14, 2019Updated 6 years ago
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated last year
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated last month
- Experimental String Graph construction and processing☆26Aug 14, 2023Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Jun 30, 2021Updated 4 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 2 years ago