☆13Jan 18, 2017Updated 9 years ago
Alternatives and similar repositories for HiC_AB_Compartments
Users that are interested in HiC_AB_Compartments are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆21Nov 19, 2020Updated 5 years ago
- cfTools is a versatile R package of analyzing cell-free DNA data.☆11Jun 12, 2026Updated 4 months ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 6 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 6 years ago
- analysis pipeline for CODEC data☆13Apr 22, 2026Updated 6 months ago
- Node Classification using Graph Convolutional Networks☆14Jun 26, 2024Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- A mass non-curated database of potential telomeric repeat sequences across the eukaryotic tree of life.☆13Oct 10, 2026Updated 3 weeks ago
- biostat final exam data and code☆10Jun 12, 2020Updated 6 years ago
- Runs and compares different methylation based cell type deconvolution algorithms☆12Jul 30, 2025Updated last year
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆190Jul 13, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- LIONHEART detects cancer from whole genome sequenced plasma cell-free DNA.☆15Aug 2, 2026Updated 3 months ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 8 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- A Sliding Window Approach to Identify Differentially Methylated Regions Based on Whole Genome Bisulfite Sequencing☆14May 22, 2023Updated 3 years ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- ☆80Jun 4, 2021Updated 5 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Aug 24, 2026Updated 2 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆15Aug 6, 2018Updated 8 years ago
- GENome Organisation Visual Analytics☆16Dec 24, 2021Updated 4 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ☆17Jul 21, 2022Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- NetICS: network-based integration of multi-omics data for prioritizing cancer genes☆16Jun 27, 2021Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- An Optimized Nested TAD caller for Hi-C data☆26Jun 30, 2021Updated 5 years ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 5 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Algorithm to identify chromatin fountains☆22Apr 25, 2024Updated 2 years ago
- ☆25Jan 18, 2022Updated 4 years ago