Alternatives and similar repositories for HiC_AB_Compartments:

Users that are interested in HiC_AB_Compartments are comparing it to the libraries listed below

• Jfortin1 / TCGA_AB_Compartments
  A/B compartments for 12 cancer types estimated from TCGA methylation data
  ☆19Updated 8 years ago
• 4dn-dcic / pairsqc
  QC report generator for Hi-C pairs file
  ☆11Updated 4 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated last year
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 3 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated 10 months ago
• bjpop / methpat
  A program for summarising CpG methylation patterns
  ☆20Updated 8 years ago
• scoutzxb / CscoreTool
  ☆20Updated 4 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated 11 months ago
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 7 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆18Updated last month
• deWitLab / peakC
  Peak calling for 4C data
  ☆12Updated 6 years ago
• anlin00007 / OnTAD
  An Optimized Nested TAD caller for Hi-C data
  ☆20Updated 3 years ago
• yupenghe / REPTILE
  Predicting regulatory DNA elements based on epigenomic signatures
  ☆27Updated 10 months ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• Xinglab / rMATS-long
  ☆28Updated 4 months ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆18Updated 4 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆30Updated last year
• sdchandra / CNAclinic
  ☆23Updated 8 months ago
• MarWoes / wg-blimp
  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
  ☆27Updated 2 years ago
• KhiabanianLab / All-FIT
  All-FIT - Allele-Frequency-based Imputation of Tumor Purity
  ☆17Updated 5 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆28Updated last year
• dekkerlab / crane-nature-2015
  code associated with crane-nature-2015, 10.1038/nature14450
  ☆34Updated 9 years ago
• gxiaolab / mountainClimber
  ☆20Updated 5 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago