Alternatives and similar repositories for gwas-pw

Users that are interested in gwas-pw are comparing it to the libraries listed below

• clagiamba / moloc
  ☆37Updated 4 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆35Updated 6 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 6 months ago
• jrs95 / gassocplot2
  Regional association plots
  ☆24Updated last year
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆76Updated 2 weeks ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆48Updated 2 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆53Updated 6 months ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆62Updated 2 months ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆25Updated 2 months ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆22Updated last year
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆54Updated 2 months ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆48Updated 3 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆71Updated 3 weeks ago
• zhilizheng / SBayesRC
  ☆46Updated 6 months ago
• hakyimlab / PredictDBPipeline
  ☆16Updated 5 years ago
• weizhou0 / GATE
  ☆23Updated 2 years ago
• gamazonlab / MR-JTI
  ☆57Updated 11 months ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated 3 weeks ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆97Updated 10 months ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆18Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆51Updated 8 months ago
• cuelee / pleio
  ☆19Updated 4 months ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago