MRCIEU / PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
☆142Updated 8 months ago
Alternatives and similar repositories for PHESANT:
Users that are interested in PHESANT are comparing it to the libraries listed below
- Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.☆87Updated last year
- An R package to manipulate and explore UK Biobank data☆98Updated last year
- Repo for the R package coloc☆160Updated 2 months ago
- Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank☆24Updated last year
- R package for CAUSE☆54Updated last year
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆76Updated 2 months ago
- ☆58Updated 7 months ago
- R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples☆55Updated last month
- Tools for processing Nightingale NMR biomarker data in UK Biobank☆33Updated 2 months ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆152Updated 6 months ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆78Updated last month
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆46Updated 4 years ago
- The PheWAS R package☆138Updated 2 months ago
- ☆30Updated 4 months ago
- Polygenic prediction via continuous shrinkage priors☆164Updated 2 months ago
- Data objects for various sets of instruments☆44Updated 4 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆51Updated 10 months ago
- Non-linear Mendelian randomization☆54Updated last year
- R interface to the IEU GWAS database API☆89Updated 5 months ago
- Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".☆12Updated 2 years ago
- High-definition likelihood inference of genetic correlations (HDL)☆101Updated this week
- corrplot of LDSC genetic correlation results☆48Updated 2 years ago
- Causal Mixture Model for GWAS summary statistics☆70Updated last year
- Meta-analysis of genomewide association scans☆50Updated 6 months ago
- ☆24Updated 3 weeks ago
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆180Updated last year
- Analysis code for applied UK Biobank analyses in Mendelian randomisation for mediation analysis and example code for MR and mediation ana…☆12Updated 4 years ago
- R-package for structural equation modeling based on GWAS summary data☆218Updated this week
- Software implementing the Latent Causal Variable Model☆63Updated 4 years ago
- Reading, querying and writing GWAS summary data in VCF format☆76Updated 9 months ago