Alternatives and similar repositories for PHESANT:

Users that are interested in PHESANT are comparing it to the libraries listed below

• kenhanscombe / ukbtools
  An R package to manipulate and explore UK Biobank data
  ☆101Updated 2 years ago
• josefin-werme / LAVA
  ☆60Updated 8 months ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆87Updated last year
• jean997 / cause
  R package for CAUSE
  ☆54Updated last year
• umich-cphds / createUKBphenome
  Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank
  ☆25Updated last year
• chr1swallace / coloc
  Repo for the R package coloc
  ☆162Updated 4 months ago
• dnanexus / UKB_RAP
  Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…
  ☆158Updated 7 months ago
• UK-Biobank / UKB-RAP-Notebooks-Access
  UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).
  ☆80Updated last month
• sritchie73 / ukbnmr
  Tools for processing Nightingale NMR biomarker data in UK Biobank
  ☆33Updated 3 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆47Updated 4 years ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆78Updated 3 months ago
• PheWAS / PheWAS
  The PheWAS R package
  ☆138Updated last month
• niekverw / ukbpheno
  ☆30Updated 5 months ago
• n-mounier / MRlap
  R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples
  ☆58Updated 2 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆52Updated 11 months ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆107Updated last week
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆71Updated last week
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆55Updated last year
• precimed / mixer
  Causal Mixture Model for GWAS summary statistics
  ☆71Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆79Updated 3 months ago
• MichelNivard / awesome-complex-trait-genetics
  A list of awesome tools for complex trait genetics.
  ☆67Updated last month
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆168Updated 3 months ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆89Updated this week
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆50Updated 3 years ago
• jrs95 / nlmr
  Non-linear Mendelian randomization
  ☆54Updated last year
• NightingaleHealth / ukb-nightingale-biomarker-atlas
  Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".
  ☆13Updated 2 years ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆192Updated 6 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 5 months ago
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆38Updated 11 months ago