tobyjohnson / gtxLinks
Genetics ToolboX R package
☆32Updated 5 years ago
Alternatives and similar repositories for gtx
Users that are interested in gtx are comparing it to the libraries listed below
Sorting:
- Regional association plots☆25Updated last year
- Colocalization analysis of genetic association signals☆52Updated 2 months ago
- GWAS for survival analysis in large cohorts☆21Updated last year
- Code for implementing Mendelian randomization investigations☆18Updated 9 years ago
- ☆18Updated 7 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆24Updated 3 years ago
- GENI plots to visualise results from genome-wide association studies☆30Updated 10 months ago
- Regional association plots☆26Updated last year
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Updated 2 years ago
- ☆35Updated 2 years ago
- A collection of various utilities for GWAS summary statistics☆32Updated last year
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆30Updated last year
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆28Updated last week
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- ☆36Updated 4 years ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆34Updated last year
- LDlinkR☆59Updated last year
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆39Updated 2 years ago
- Upgrade to coloc☆13Updated 7 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 2 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- Primo☆16Updated 3 years ago
- QTL Discovery using Annotations☆25Updated 2 years ago
- Pariwise analysis of GWAS☆43Updated 6 years ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 6 months ago
- Software for estimating correlation of trait effect sizes across populations☆47Updated 2 months ago