Alternatives and similar repositories for gtx

Users that are interested in gtx are comparing it to the libraries listed below

• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆17Updated 9 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated 11 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• Stahl-Lab-MSSM / coloc2
  Upgrade to coloc
  ☆13Updated 6 years ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• thewonlab / H-MAGMA
  ☆33Updated 2 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆28Updated 8 months ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated last week
• clagiamba / moloc
  ☆35Updated 4 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• hakyimlab / gtex-gwas-analysis
  ☆23Updated 3 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated 2 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆31Updated 3 weeks ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 3 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆21Updated 7 months ago