Alternatives and similar repositories for Popcorn:

Users that are interested in Popcorn are comparing it to the libraries listed below

• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 3 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 4 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆30Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆45Updated 2 weeks ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆33Updated 2 months ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 6 months ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 8 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆79Updated 2 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• weizhou0 / GATE
  ☆22Updated last year
• Kyoko-wtnb / FUMA-webapp
  Source code of FUMA GWAS web application
  ☆57Updated last year
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆19Updated last year
• FinucaneLab / pops
  ☆73Updated 2 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆57Updated 4 months ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 4 months ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago
• cuelee / pleio
  ☆18Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆44Updated last week
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆51Updated last year
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆25Updated 4 years ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆22Updated 3 months ago