Alternatives and similar repositories for TwoSampleMR:

Users that are interested in TwoSampleMR are comparing it to the libraries listed below

• bulik / ldsc
  LD Score Regression (LDSC)
  ☆684Updated 7 months ago
• HaobinZhou / Get_MR
  A package for running MR In batches and in parallel quickly
  ☆299Updated 6 months ago
• linjf15 / MR_tricks
  ☆195Updated last year
• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆356Updated last year
• chr1swallace / coloc
  Repo for the R package coloc
  ☆164Updated this week
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆223Updated last month
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,077Updated last month
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆183Updated last year
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆134Updated 2 years ago
• mvab / mendelian-randomization-breast-cancer
  Analysis workflow for MRC-IEU PhD mini-project on childhood BMI effect on breast cancer
  ☆82Updated 11 months ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆242Updated 2 months ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆465Updated 10 months ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆86Updated last year
• cole-trapnell-lab / monocle3
  ☆373Updated 2 months ago
• jmzeng1314 / scRNA_smart_seq2
  ☆305Updated 5 years ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆449Updated last week
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆875Updated last year
• YinLiLin / CMplot
  📊 Circular and Rectangular Manhattan Plot
  ☆554Updated 10 months ago
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆281Updated last year
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆234Updated 2 weeks ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆192Updated 7 months ago
• cran / MendelianRandomization
   This is a read-only mirror of the CRAN R package repository. MendelianRandomization — Mendelian Randomization Package
  ☆45Updated 11 months ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆284Updated 3 weeks ago
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆388Updated 2 weeks ago
• junjunlab / scRNAtoolVis
  Useful functions to make your scRNA-seq plot more cool!
  ☆326Updated 2 months ago
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• jmzeng1314 / 5years
  ☆239Updated 5 years ago
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆169Updated 4 months ago
• immunogenomics / harmony
  Fast, sensitive and accurate integration of single-cell data with Harmony
  ☆559Updated 4 months ago
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆91Updated 2 weeks ago