whitews / FlowIOLinks
A Python library for reading and writing Flow Cytometry Standard (FCS) files
☆47Updated 3 weeks ago
Alternatives and similar repositories for FlowIO
Users that are interested in FlowIO are comparing it to the libraries listed below
Sorting:
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆17Updated this week
- A data-centric flow/mass cytometry automated analysis framework☆40Updated 4 months ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆33Updated 2 years ago
- bioinformatics plotting and tools☆57Updated last year
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆64Updated last year
- Multimodal Data (.h5mu) implementation for Python☆98Updated last week
- Signac☆25Updated 2 years ago
- Flow & mass cytometry analytics.☆50Updated this week
- Python Flow Cytometry Calibration Library☆50Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆64Updated last year
- Code and documentation for the curation of cellxgene datasets☆45Updated this week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated 3 weeks ago
- Subpopulation detection in high-dimensional single-cell data☆69Updated 4 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 9 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- ☆54Updated 2 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆27Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆62Updated 3 weeks ago
- ☆43Updated 7 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- Multi-modal single cell analysis pipelines☆58Updated last month
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 2 months ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆57Updated 4 years ago
- One-liner for mapping orthologous genes in both R and python using ENSEMBL BioMART☆22Updated 3 years ago
- Batch balanced KNN☆161Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated last week