whitews / FlowIO
A Python library for reading and writing Flow Cytometry Standard (FCS) files
☆45Updated this week
Alternatives and similar repositories for FlowIO:
Users that are interested in FlowIO are comparing it to the libraries listed below
- FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation …☆15Updated last month
- A data-centric flow/mass cytometry automated analysis framework☆39Updated 2 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆46Updated last week
- Python Flow Cytometry Calibration Library☆50Updated 8 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆60Updated last year
- ☆51Updated last week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆67Updated this week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆57Updated last week
- Flow & mass cytometry analytics.☆46Updated last week
- bioinformatics plotting and tools☆56Updated 9 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- Functional Associations using Variational Autoencoders☆39Updated last month
- Signac☆25Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 2 months ago
- Image Mass Cytometry analysis pipeline☆25Updated 2 months ago
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆32Updated 2 years ago
- ☆50Updated 10 months ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆34Updated this week
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- ☆12Updated last year
- Predicting Cell Health with Morphological Profiles☆36Updated 3 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- ☆29Updated 11 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆62Updated last year
- ☆41Updated this week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆51Updated 7 months ago