Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
☆28Aug 30, 2026Updated this week
Alternatives and similar repositories for webknossos-libs
Users that are interested in webknossos-libs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Zarr Enhancement Proposals☆16May 29, 2026Updated 3 months ago
- ☆19Nov 12, 2025Updated 9 months ago
- Visualize, share and annotate your large 3D images online☆181Updated this week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Updated this week
- Versioned Key-Value Store with RocksDB backend and gRPC API☆15May 11, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 5 months ago
- Render transformed image tiles☆37Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆24Feb 14, 2026Updated 6 months ago
- ☆11Jun 11, 2020Updated 6 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 7 months ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Block-wise operations for large nD volumes☆45Aug 26, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20May 1, 2025Updated last year
- Command-line client for Fractal☆49Updated this week
- Tools for distributed alignment of massive images☆95Updated this week
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 11 months ago
- Constraint-based Causal Structure Learning on GPUs.☆43Nov 23, 2022Updated 3 years ago
- Build contrasts for models defined with formulaic☆13Updated this week
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆134Jul 2, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Nov 13, 2025Updated 9 months ago
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 4 years ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- A Python library for finding the names of colors.☆13Jun 29, 2024Updated 2 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated last month
- Github Pages☆12Apr 29, 2024Updated 2 years ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers☆14Apr 17, 2023Updated 3 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- ☆11Nov 15, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆109Jul 27, 2026Updated last month
- Reading HDF5 files with Zarr☆12Oct 5, 2021Updated 4 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Aug 1, 2026Updated last month
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Jul 23, 2023Updated 3 years ago
- Course Planning System for HPI masters☆14Apr 8, 2021Updated 5 years ago
- Transformer And Rapid Dimensionless Instance Segmentation☆24May 30, 2026Updated 3 months ago
- ☆45Aug 26, 2026Updated last week