Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and server interactions. Includes converter to OME-Zarr.
☆28Jul 20, 2026Updated this week
Alternatives and similar repositories for webknossos-libs
Users that are interested in webknossos-libs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Zarr Enhancement Proposals☆16May 29, 2026Updated last month
- ☆19Nov 12, 2025Updated 8 months ago
- Visualize, share and annotate your large 3D images online☆177Updated this week
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Jul 14, 2026Updated last week
- Versioned Key-Value Store with RocksDB backend and gRPC API☆15May 11, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 3 months ago
- Render transformed image tiles☆37Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆25Feb 14, 2026Updated 5 months ago
- ☆11Jun 11, 2020Updated 6 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 6 months ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Block-wise operations for large nD volumes☆45Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆20May 1, 2025Updated last year
- Command-line client for Fractal☆49Updated this week
- Tools for distributed alignment of massive images☆95Updated this week
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 10 months ago
- Time Tracking for Github issues.☆13Oct 16, 2017Updated 8 years ago
- Vasculature blood flow computation and impact of astrocytic endfeet on vessels☆11Feb 26, 2025Updated last year
- Build contrasts for models defined with formulaic☆13Updated this week
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆133Jul 2, 2026Updated 3 weeks ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆47Nov 13, 2025Updated 8 months ago
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆249Updated this week
- A Python library for finding the names of colors.☆13Jun 29, 2024Updated 2 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Updated this week
- Github Pages☆12Apr 29, 2024Updated 2 years ago
- 3D Mitochondria Instance Segmentation with Spatio-Temporal Transformers☆14Apr 17, 2023Updated 3 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Nov 15, 2023Updated 2 years ago
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆107Sep 26, 2025Updated 9 months ago
- Reading HDF5 files with Zarr☆12Oct 5, 2021Updated 4 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆69Updated this week
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Jul 23, 2023Updated 3 years ago
- Course Planning System for HPI masters☆14Apr 8, 2021Updated 5 years ago
- Transformer And Rapid Dimensionless Instance Segmentation☆23May 30, 2026Updated last month