☆36Nov 11, 2022Updated 3 years ago
Alternatives and similar repositories for fargene
Users that are interested in fargene are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 2 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- ☆27Jan 30, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆21Oct 2, 2025Updated 6 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆94Mar 30, 2026Updated 2 weeks ago
- ☆12Apr 3, 2025Updated last year
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Mar 25, 2026Updated 3 weeks ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated last month
- Plasmid exploration of bacterial genomes☆23Mar 2, 2022Updated 4 years ago
- Prophage Activity Estimator☆32May 30, 2024Updated last year
- whole genome MLST analysis☆51Mar 27, 2026Updated 3 weeks ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Feb 10, 2022Updated 4 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆43Jul 23, 2021Updated 4 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆409Mar 26, 2026Updated 3 weeks ago
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated 11 months ago
- geNomad: Identification of mobile genetic elements☆303Mar 29, 2026Updated 3 weeks ago
- A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/pl…☆33Jun 17, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Apr 10, 2026Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated last year
- ☆30Dec 22, 2023Updated 2 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 2 months ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago