Python library for simple and complex indels.
☆12Jan 22, 2024Updated 2 years ago
Alternatives and similar repositories for indelPost
Users that are interested in indelPost are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 6 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Telomere-to-Telomere diploid Indian Genome☆15Mar 5, 2026Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11May 12, 2021Updated 5 years ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated 11 months ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- v2.x of the microassembly based somatic variant caller☆29May 31, 2026Updated last week
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 8 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Mar 26, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Apr 28, 2026Updated last month
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 4 years ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last month
- A pipeline creation tool using Snakemake☆13Jun 4, 2026Updated last week
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- Cancer circRNA identification pipeline with an ensemble approach☆18May 18, 2026Updated 3 weeks ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- slack bot written in go that processes DM's / app mentions and replies with chat-gpt's response☆14May 2, 2023Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Feb 10, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- ☆15Oct 3, 2017Updated 8 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Process SMRT sequencing kinetic summary to predict regional methylation on large genome☆13Dec 4, 2018Updated 7 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆43Nov 28, 2025Updated 6 months ago
- Python-based web scraper for extracting gene summaries from GeneCards.☆12Oct 3, 2024Updated last year
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.☆17Jul 30, 2025Updated 10 months ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago