vicsanga / PostreLinks
POSTRE: Prediction Of STRuctural variant Effects
☆28Updated last month
Alternatives and similar repositories for Postre
Users that are interested in Postre are comparing it to the libraries listed below
Sorting:
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 11 months ago
- ☆38Updated last year
- A tutorial on structural variant calling for short read sequencing data☆39Updated last year
- Master of Pores 2☆23Updated last year
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Structural variant merging tool☆57Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- for visual evaluation of read support for structural variation☆56Updated last year
- An insertion caller for Illumina paired-end WGS data.☆24Updated 5 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆38Updated this week
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- ☆33Updated 3 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- Toolkit for genome-wide analysis of tandem repeats☆59Updated 3 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆54Updated 4 years ago
- ☆51Updated 6 years ago
- Variant catalogue pipeline☆26Updated last week
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago