Tutorials, workflows, and convenience scripts for Single Cell Portal
☆52Mar 5, 2024Updated 2 years ago
Alternatives and similar repositories for single_cell_portal
Users that are interested in single_cell_portal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆73Jun 29, 2026Updated 3 weeks ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ☆23Feb 7, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the paper on t-SNE with variable degree of freedom☆11Jun 27, 2019Updated 7 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆38Jul 24, 2017Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- ☆11Jun 23, 2017Updated 9 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Python client for MyVariant.info web services.☆23Jan 14, 2025Updated last year
- an R package to biotype a community☆14Oct 19, 2021Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆49Mar 1, 2018Updated 8 years ago
- Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")☆41Feb 12, 2026Updated 5 months ago
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated last week
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 7 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- Collection of useful methods for single cell analysis☆15Aug 22, 2024Updated last year
- ☆15Dec 21, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 10 years ago
- R package for analyzing single-cell RNA-seq data☆180Feb 29, 2024Updated 2 years ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago
- 🎡 Unified access to OLS instances like from the EBI and TIB☆14Apr 20, 2026Updated 3 months ago
- ☆27Mar 31, 2026Updated 3 months ago
- Scripts related to VISp and ALM scRNA-seq and FISH analysis for Tasic, et al., 2018.☆24Jun 15, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An analytics package for single cell data☆22May 18, 2022Updated 4 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated 3 months ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆21Aug 29, 2022Updated 3 years ago
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆21Jan 17, 2023Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago