broadinstitute / single_cell_portalLinks
Tutorials, workflows, and convenience scripts for Single Cell Portal
☆50Updated last year
Alternatives and similar repositories for single_cell_portal
Users that are interested in single_cell_portal are comparing it to the libraries listed below
Sorting:
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆68Updated this week
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated 2 years ago
- ☆69Updated 7 years ago
- ☆34Updated 6 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 11 months ago
- ☆22Updated 5 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆84Updated 11 months ago
- ☆43Updated last year
- ☆49Updated 7 years ago
- ☆69Updated last year
- Scanpy use cases.☆86Updated 4 years ago
- ☆61Updated 4 years ago
- Cloud-based scalable and efficient single-cell genomics workflows☆66Updated this week
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆64Updated last week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆101Updated 3 months ago
- ☆44Updated 2 weeks ago
- An R-based interface for loom files☆66Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 3 months ago
- Doublet detection in single-cell RNA-seq data.☆92Updated 6 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ☆55Updated 4 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated 3 months ago