broadinstitute / single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
☆50Updated 11 months ago
Alternatives and similar repositories for single_cell_portal:
Users that are interested in single_cell_portal are comparing it to the libraries listed below
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated last year
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆67Updated this week
- ☆67Updated 6 years ago
- Cloud-based scalable and efficient single-cell genomics workflows☆60Updated this week
- ☆33Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Doublet detection in single-cell RNA-seq data.☆91Updated 3 weeks ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆36Updated last month
- An R-based interface for loom files☆66Updated 4 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆59Updated 11 months ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 8 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆65Updated 6 years ago
- ☆59Updated 6 months ago
- Python implementation of the Loom file format - http://loompy.org☆142Updated 2 months ago
- Code and documentation for the curation of cellxgene datasets☆40Updated this week
- ☆67Updated 10 months ago
- ☆22Updated 6 years ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆99Updated last month
- ☆53Updated last week
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆81Updated 5 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆80Updated 7 months ago
- Galaxy container for single cell RNA-Seq tertiary analysis tools☆17Updated this week
- Fast visualization tool for large-scale and high dimensional single-cell data☆69Updated last year