broadinstitute / single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
☆50Updated last year
Alternatives and similar repositories for single_cell_portal:
Users that are interested in single_cell_portal are comparing it to the libraries listed below
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆67Updated this week
- ☆64Updated last year
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated last year
- ☆67Updated 6 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 8 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆69Updated 11 months ago
- Explore and download data from the recount3 project☆34Updated 3 months ago
- ☆55Updated 6 years ago
- ☆33Updated 5 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆117Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- ☆53Updated last month
- Pipeline for processing inDrops sequencing data☆75Updated 6 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆60Updated last year
- Unsupervised correction of gene independent cell responses to CRISPR-cas9☆49Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- a pipeline for single cell RNA-seq data analysis☆68Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- Mouse cell atlas☆60Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆37Updated 2 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Fast visualization tool for large-scale and high dimensional single-cell data☆69Updated 2 years ago