Alternatives and similar repositories for Supplemental-Material:

Users that are interested in Supplemental-Material are comparing it to the libraries listed below

• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated last week
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 3 months ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆20Updated last year
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆17Updated 3 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• Sun-lab / scRNAseq_pipelines
  pipelines to process scRNA-seq data
  ☆11Updated 4 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆38Updated last year
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆18Updated 3 years ago
• stephaniehicks / spatialexperiment-analysis
  repo to explore spatial data in R/Bioconductor and Python
  ☆12Updated 5 years ago
• HCBravoLab / scTreeViz
  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions
  ☆10Updated 3 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• hms-dbmi / scw
  HSCI/Catalyst Single-cell RNA-Seq Workshop
  ☆19Updated 6 years ago
• hb-gitified / cellrangerRkit
  Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
  ☆19Updated 5 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• rnabioco / cellar
  scRNA-Seq analysis vignettes
  ☆9Updated 3 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 10 months ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 4 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆22Updated 2 years ago