boutroslab / Supplemental-MaterialLinks
Repository for supplemental material of manuscripts
☆18Updated 4 years ago
Alternatives and similar repositories for Supplemental-Material
Users that are interested in Supplemental-Material are comparing it to the libraries listed below
Sorting:
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- ☆14Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Gene-level general linear mixed model☆22Updated 6 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 months ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- pipelines to process scRNA-seq data☆12Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- scRNA-seq data visualization from scrattch☆26Updated 3 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Materials presented at the BiocNYC meet-up☆12Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated last year
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆12Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- CellAnn☆12Updated last year
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆19Updated 3 months ago
- Co-expression network management based on WGCNA + k-means☆19Updated 4 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆9Updated 4 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Code for EpiMap data browser☆14Updated last year
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆9Updated 4 years ago