flo-compbio / gopcaLinks
GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
☆14Updated 8 years ago
Alternatives and similar repositories for gopca
Users that are interested in gopca are comparing it to the libraries listed below
Sorting:
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Updated 7 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Create QC and summary reports for Alevin output☆31Updated 3 months ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 weeks ago
- ☆21Updated 8 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- cyclone☆19Updated 10 years ago
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆24Updated this week
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Updated 7 years ago