JhuangLab / ngstkLinks
A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
☆19Updated 6 years ago
Alternatives and similar repositories for ngstk
Users that are interested in ngstk are comparing it to the libraries listed below
Sorting:
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 8 months ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Updated 5 years ago
- Gene-level general linear mixed model☆22Updated 6 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Genomic plot in trellis layout☆41Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 3 months ago
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 10 months ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R package wrapping bedtools☆41Updated 4 months ago
- Glimma R package☆50Updated 11 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- DriverPower☆26Updated 6 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 10 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- HOT regions paper☆11Updated 6 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 weeks ago
- Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis☆40Updated 4 years ago
- Devel repository for minfi☆60Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago