A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
☆19Nov 20, 2018Updated 7 years ago
Alternatives and similar repositories for ngstk
Users that are interested in ngstk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform☆56Jan 8, 2023Updated 3 years ago
- A set of command line tools based on R and JavaScript.☆18Apr 21, 2020Updated 5 years ago
- Implements the JSON, INI, YAML and TOML parser, for R setting and writing of configuration file.☆60Jul 19, 2023Updated 2 years ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Apr 20, 2020Updated 5 years ago
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Source code of openbiox homepage (under development status).☆14May 9, 2023Updated 2 years ago
- Let's get started!☆15Oct 21, 2019Updated 6 years ago
- Slides from my talk "Don’t reinvent the wheel: making use of shiny extension packages"☆22Feb 23, 2019Updated 7 years ago
- Simulation and data analysis code for dream paper☆11Jun 5, 2020Updated 5 years ago
- a modified version of FunSeq2 using new data context☆15Aug 18, 2022Updated 3 years ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- An R package to create forestplots of measures of effects with their confidence intervals.☆63May 7, 2021Updated 4 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Add-on package for using the Gridster library with Shiny☆25May 12, 2016Updated 9 years ago
- Shiny app allowing to convert HTML to R.☆10Sep 8, 2020Updated 5 years ago
- An R package for fitting and visualising radial inverse variance weighted and radial MR-Egger models.☆35Nov 28, 2025Updated 3 months ago
- HGNC Comparison of Orthology Predictions (HCOP)☆15Mar 22, 2018Updated 8 years ago
- ☆10Mar 14, 2017Updated 9 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- An example Keras pipeline with the targets R package☆16Sep 22, 2021Updated 4 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆21Apr 24, 2019Updated 6 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- Compilation of information and code bases related to open-source trackers for C. elegans☆14Apr 23, 2025Updated 11 months ago
- R interface to morpheus.js heatmap widget☆40Oct 22, 2020Updated 5 years ago
- ☆11Jun 23, 2017Updated 8 years ago
- pdf.js htmlwidget for R☆42Jun 20, 2018Updated 7 years ago
- Live theme switcher for R Shinydashboard applications☆13Jul 13, 2022Updated 3 years ago
- Repository for the manuscript: 'Impacts of past abrupt land change on local biodiversity globally'☆11Oct 20, 2019Updated 6 years ago
- An assistive shiny application toolkit built for scaling and standardizing application development☆18Jan 29, 2025Updated last year
- CANTRIP: A database of CANopy TRaIt Plasticity☆10Nov 4, 2016Updated 9 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- Reusable Shiny Modules and Other Shiny Things☆25Oct 29, 2021Updated 4 years ago
- Infrastructure of Hiplot (ORG)☆26Nov 18, 2024Updated last year
- ARCHIVED☆26May 10, 2022Updated 3 years ago
- A Grammar of Interactive Graphics☆22Oct 9, 2017Updated 8 years ago
- A project to develop the R Shiny applications.☆12May 13, 2019Updated 6 years ago
- React widgets for Shiny apps☆19Mar 18, 2019Updated 7 years ago
- ☆11Aug 21, 2018Updated 7 years ago