JhuangLab / ngstkLinks
A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
☆19Updated 6 years ago
Alternatives and similar repositories for ngstk
Users that are interested in ngstk are comparing it to the libraries listed below
Sorting:
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- anor: an annotation and visualization system based on R and Shiny framework☆33Updated 5 years ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Updated 5 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 8 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 2 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- Genomic plot in trellis layout☆40Updated last year
- DriverPower☆26Updated 5 months ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆24Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Gene-level general linear mixed model☆22Updated 5 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆32Updated 10 months ago
- HOT regions paper☆11Updated 6 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 8 months ago
- An interactive graphical illustration of genetic associations and their biological context☆16Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated last month
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- R package wrapping bedtools☆41Updated 3 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis☆40Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 2 years ago
- Functional Enrichment Analysis and Network Construction☆9Updated 5 years ago
- Glimma R package☆50Updated 10 months ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆23Updated last week
- Representation and manipulation of genomic intervals☆46Updated 3 weeks ago