adamh-broad / single_cell_intestine
R code for single-cell analysis of intestinal epithelial cells
☆21Updated 7 years ago
Alternatives and similar repositories for single_cell_intestine:
Users that are interested in single_cell_intestine are comparing it to the libraries listed below
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ☆31Updated 5 years ago
- ☆16Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 4 months ago
- scWGCNA☆56Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆23Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- ☆53Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆76Updated 2 years ago
- ☆27Updated 3 years ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- R-code used for single-cell RNA-Seq analysis of kidney data.☆17Updated 5 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆28Updated 5 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆44Updated 5 months ago