R code for single-cell analysis of intestinal epithelial cells
☆23Nov 18, 2017Updated 8 years ago
Alternatives and similar repositories for single_cell_intestine
Users that are interested in single_cell_intestine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆47May 13, 2016Updated 9 years ago
- ☆14Jul 1, 2025Updated 9 months ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- Analysis of single cell RNA-seq data from innate lympoid cells☆15Aug 8, 2017Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago
- ☆10Dec 14, 2016Updated 9 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆32May 12, 2020Updated 5 years ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 7 years ago
- Galaxy container for single cell RNA-Seq tertiary analysis tools☆18Jun 26, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14May 26, 2020Updated 5 years ago
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- Functions for single cell data analysis☆32May 28, 2021Updated 4 years ago
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …☆15Apr 12, 2023Updated 3 years ago
- R package to visualize scRNA sequencing data.☆21Feb 4, 2022Updated 4 years ago
- ☆22Feb 7, 2020Updated 6 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆96Apr 29, 2020Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- ☆12Jul 6, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Post-verkko graph and assembly curation in Python.☆18Apr 9, 2026Updated last week
- A framework for analyzing biological data via graph construction, clustering, and embedding generation. The resulting embeddings power do…☆19Apr 2, 2026Updated 2 weeks ago
- A viral haplotype reconstruction tool for long reads.☆13Mar 2, 2024Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Front-end code for Serratus project website☆12Jul 2, 2024Updated last year
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆41Jul 21, 2019Updated 6 years ago
- Tools for the analysis of heterogeneous tissues☆14Aug 24, 2022Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆199Mar 16, 2023Updated 3 years ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Jun 13, 2023Updated 2 years ago
- ☆64Sep 15, 2020Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆98Nov 24, 2020Updated 5 years ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Mar 19, 2026Updated last month
- Unofficial Segment.io Management node.js SDK☆11Oct 17, 2017Updated 8 years ago