adamh-broad / single_cell_intestineLinks
R code for single-cell analysis of intestinal epithelial cells
☆22Updated 8 years ago
Alternatives and similar repositories for single_cell_intestine
Users that are interested in single_cell_intestine are comparing it to the libraries listed below
Sorting:
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆59Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆34Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆47Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ☆55Updated 4 years ago
- ☆34Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 8 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- ☆17Updated 6 years ago
- ☆47Updated 10 months ago
- ☆29Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago