knights-lab / dietstudy_analysesLinks
☆12Updated 6 years ago
Alternatives and similar repositories for dietstudy_analyses
Users that are interested in dietstudy_analyses are comparing it to the libraries listed below
Sorting:
- USDA Nutrition codes Tree☆11Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 7 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- tidyMicro GitHup Repository☆21Updated 4 years ago
- Microbiome research☆21Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- R package computes correlation for relative abundances☆13Updated 8 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- an R package to biotype a community☆14Updated 4 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 10 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- Linear Decomposition Model☆25Updated 2 years ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 9 years ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Updated last year
- A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.☆25Updated 2 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Updated 6 years ago
- ☆11Updated 9 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- User-Friendly R Package for Supervised Machine Learning Pipelines☆60Updated 3 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Updated 3 years ago