☆39Jan 13, 2022Updated 4 years ago
Alternatives and similar repositories for MLRepo
Users that are interested in MLRepo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compare different differential abundance and expression methods☆54Mar 8, 2022Updated 4 years ago
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 8 years ago
- R package version of the splinectomy longitudinal statistical analysis tools☆17Apr 21, 2022Updated 4 years ago
- ☆17Dec 5, 2017Updated 8 years ago
- Auto-parameterizing QC Pipeline for Illumina sequencing runs☆18Jul 9, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 2 weeks ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Curated Metagenomic Data of the Human Microbiome☆156Jun 19, 2026Updated last week
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jun 3, 2026Updated 3 weeks ago
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆84May 14, 2019Updated 7 years ago
- Deep representation learning for disease prediction based on microbiome data☆65Apr 21, 2023Updated 3 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A healthy human gut genome collection☆26Aug 21, 2025Updated 10 months ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆39May 25, 2023Updated 3 years ago
- Microbiome profiling☆15Nov 20, 2025Updated 7 months ago
- Multi-omics multi-layered network integration and interpretation☆14Oct 15, 2024Updated last year
- ☆14Feb 6, 2020Updated 6 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Jun 7, 2023Updated 3 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- Interactive package for Short AsyNchronous Time-series Analysis (SANTA) in R, implemented in Shiny☆11Mar 6, 2024Updated 2 years ago
- StrainFinder☆30Jul 8, 2018Updated 7 years ago
- ** Blood metabolome predicts gut microbiome α-diversity in humans**☆24Sep 23, 2019Updated 6 years ago
- Pan-genome Analysis☆12May 4, 2025Updated last year
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- Neural networks for microbe-metabolite interaction analysis☆133Nov 4, 2022Updated 3 years ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆92Oct 9, 2025Updated 8 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆21Oct 8, 2025Updated 8 months ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆30May 11, 2026Updated last month
- ☆80Oct 16, 2024Updated last year
- (formerly eelpond) an automated RNA-Seq workflow system