knights-lab / MLRepo
☆37Updated 3 years ago
Alternatives and similar repositories for MLRepo:
Users that are interested in MLRepo are comparing it to the libraries listed below
- ☆61Updated 3 months ago
- gutSMASH☆54Updated 3 weeks ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆34Updated 9 months ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆26Updated 6 years ago
- Analyses in R and Python Using curatedMetagenomicData☆28Updated last week
- ☆68Updated 4 years ago
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- SHallow shOtGUN profiler☆54Updated 2 years ago
- ☆35Updated last year
- Protein Alignment and Detection Interface☆61Updated 9 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆112Updated 8 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Metagenome analysis using the Kraken software suite☆30Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- ☆18Updated last year
- Time-Course Multi-Omics data integration☆24Updated 9 months ago
- ☆30Updated 4 years ago
- Compare different differential abundance and expression methods☆50Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆25Updated last year
- pathway based data integration and visualization☆40Updated 9 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- Neural networks for microbe-metabolite interaction analysis☆118Updated 2 years ago
- ☆20Updated 4 years ago
- Course material for the metagenomics course☆43Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- A pipeline for differential expression and differential alternative splicing analysis☆61Updated 8 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year