Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.
☆37Sep 23, 2020Updated 5 years ago
Alternatives and similar repositories for GMHI_2020
Users that are interested in GMHI_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- ☆18Nov 19, 2022Updated 3 years ago
- ☆14Apr 3, 2025Updated last year
- Microbiome research☆21May 24, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Curso: Bases para la inferencia filogenética, construcción, lectura e interpretación de árboles filogenéticos, 27 agosto-26 septiembre 20…☆12Oct 4, 2024Updated last year
- ☆18Nov 19, 2024Updated last year
- ☆23Nov 6, 2020Updated 5 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆41Sep 28, 2022Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆108Nov 13, 2025Updated 8 months ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- gutSMASH☆60Oct 3, 2025Updated 9 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆88Jul 13, 2026Updated last week
- ☆13Dec 2, 2024Updated last year
- A manually curated database of human gut metabolic modules.☆19Jul 27, 2018Updated 7 years ago
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 4 months ago
- SourceTracker2☆92Jul 10, 2024Updated 2 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆141Apr 27, 2026Updated 2 months ago
- ☆40Dec 16, 2023Updated 2 years ago
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 5 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Code depository for papers☆27Oct 22, 2025Updated 8 months ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆46Jun 25, 2020Updated 6 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Analyses in R and Python Using curatedMetagenomicData☆38Nov 16, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- VAginaL community state typE Nearest CentroId clAssifier☆24Apr 18, 2023Updated 3 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Jun 17, 2026Updated last month
- Spatially Clustered Regression☆11Aug 26, 2022Updated 3 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago