jaeyunsung / GMHI_2020Links
Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.
☆35Updated 5 years ago
Alternatives and similar repositories for GMHI_2020
Users that are interested in GMHI_2020 are comparing it to the libraries listed below
Sorting:
- A repository for large-scale microbiome datasets, formatted for phyloseq☆39Updated last year
- Analysis framework for integrating gut microbiome and host gene expression data☆34Updated 3 years ago
- ☆57Updated last year
- ☆24Updated 5 years ago
- gutSMASH☆56Updated last month
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆31Updated 5 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Updated this week
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Visualize microbiome data with black magic ggtree☆68Updated 5 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆62Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 5 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆42Updated 5 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 5 months ago
- Statistical analysis for sparse high-throughput sequencing☆70Updated 11 months ago
- R implementation of the LEfSe method☆61Updated this week
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 3 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- R package for downstream Microbiome analysis☆30Updated 11 months ago
- ☆76Updated last year
- ☆37Updated last year
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Updated 3 months ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated last week
- A microbiome analysis toolkit for R☆24Updated 2 years ago
- Scripts for stat and plot figures in rice microbiome paper☆20Updated 6 years ago
- R shiny app for interactive microbiome analysis☆56Updated 5 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- ☆13Updated 11 months ago
- ☆19Updated 3 years ago