jaeyunsung / GMHI_2020
Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.
☆33Updated 4 years ago
Alternatives and similar repositories for GMHI_2020:
Users that are interested in GMHI_2020 are comparing it to the libraries listed below
- Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …☆30Updated 4 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Analyses in R and Python Using curatedMetagenomicData☆30Updated this week
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆40Updated last month
- ☆35Updated last year
- A shiny package for microbiome functional enrichment analysis☆38Updated 5 months ago
- gutSMASH☆53Updated 3 months ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 5 years ago
- R implementation of the LEfSe method☆56Updated last month
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- Visualize microbiome data with black magic ggtree☆66Updated 4 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆32Updated 2 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 6 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- ☆13Updated 3 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 3 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- ☆23Updated 4 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Updated 2 years ago
- A microbiome analysis toolkit for R☆22Updated last year
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆33Updated 3 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆40Updated 4 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆29Updated last year
- ☆32Updated last year
- Microbiome analysis☆51Updated this week
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 6 months ago