Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.
☆37Sep 23, 2020Updated 5 years ago
Alternatives and similar repositories for GMHI_2020
Users that are interested in GMHI_2020 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Chang and Gupta et al., Gut Microbiome Wellness Index 2 Enhances Health Status Prediction from Gut Microbiome Taxonomic Profiles, Nature …☆25Jan 20, 2025Updated last year
- ☆18Nov 19, 2022Updated 3 years ago
- ☆12Apr 3, 2025Updated 11 months ago
- Microbiome research☆21May 24, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆17Nov 19, 2024Updated last year
- ☆22Nov 6, 2020Updated 5 years ago
- Code and analysis results for the CRC shotgun meta-analysis☆38Sep 28, 2022Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 4 months ago
- ☆11Mar 10, 2024Updated 2 years ago
- Quantitative Microbiome Profiling☆15Mar 13, 2021Updated 5 years ago
- gutSMASH☆58Oct 3, 2025Updated 5 months ago
- BiomeNED main code☆12Jul 25, 2019Updated 6 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- ☆13Dec 2, 2024Updated last year
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆85Nov 3, 2025Updated 4 months ago
- Zero-Inflated Beta Random Effect model☆31Mar 6, 2026Updated 3 weeks ago
- SourceTracker2☆86Jul 10, 2024Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Nov 24, 2015Updated 10 years ago
- ☆40Dec 16, 2023Updated 2 years ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆131Mar 14, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Unsupervised learning based Microbial Interaction inference method using BAyesian esTimatiOn☆10Apr 22, 2021Updated 4 years ago
- Analyses in R and Python Using curatedMetagenomicData☆35Nov 16, 2025Updated 4 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 3 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆45Jun 25, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Code depository for papers☆27Oct 22, 2025Updated 5 months ago
- VAginaL community state typE Nearest CentroId clAssifier☆23Apr 18, 2023Updated 2 years ago
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 4 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago