Alternatives and similar repositories for GMHI_2020

Users that are interested in GMHI_2020 are comparing it to the libraries listed below

• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆38Updated last year
• nearinj / Comparison_of_DA_microbiome_methods
  ☆57Updated last year
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆33Updated 3 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆59Updated 4 months ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆57Updated 2 months ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆44Updated this week
• lch14forever / microbiomeViz
  Visualize microbiome data with black magic ggtree
  ☆68Updated 4 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 2 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 4 months ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆31Updated 3 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 8 months ago
• FrederickHuangLin / ANCOM-Code-Archive
  Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…
  ☆63Updated 3 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 8 months ago
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 10 months ago
• zellerlab / crc_meta
  Code and analysis results for the CRC shotgun meta-analysis
  ☆39Updated 2 years ago
• PriceLab / ShannonMets
  ** Blood metabolome predicts gut microbiome α-diversity in humans**
  ☆24Updated 5 years ago
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆55Updated 2 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆125Updated 3 months ago
• xielab2017 / EasyMicroPlot
  R package for downstream Microbiome analysis
  ☆30Updated 8 months ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆121Updated last year
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆118Updated 3 weeks ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆74Updated 10 months ago
• zhouhj1994 / LinDA
  ☆37Updated last year
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆32Updated this week
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆59Updated 11 months ago
• borenstein-lab / mimosa2
  ☆13Updated 8 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆72Updated 2 years ago